Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00891 ATGGCTTCTCACCAACAAGAGCCATGGCTATTGGAGAATGGAAAGCCGAAGGTGCTGACCAGGGAGATGAGGCATGGCCGCACAGCACACAGCATGTCCTCAAACTCTTTGCGCAAGAAGTCTAGCCGCACTCTTGTCTCCAAGGTTCCCTGTGCCACCTTCAGAAACTTGCTCTCCAACTTGCAAGAGGTTATTCTTGGCACCAAGCTTTCCATTCTCATCCCTGCCATTCCTGCTGCCATCTTTGCCGAGTGCTATGGCTTTGGAAGACCTTGGGTTTTTATATTGAGCTTAATTGGACTCACCCCACTTGCTGAACGTGTGAGCTTCATCACAGAACAAGTTGCCTTTTACACTGGTCCCACAGTTGGAGGACTTCTGAATGCGACATGTGGGAATGTTACTGAGCTCATAATAGCAATTTTTGCTCTTAGCACTAACAAAATTGCTGTGGTCAAGTATTCTCTGTTGGGTTCTATTCTTTCAAACCTTCTTCTGGTTCTTGGGACCTCTCTTTTATGTGGTGGCATAGCAAACCTTGGAGTGGAACAAAAATATGATAGAAGACAAGCAGATGTTAACTCACTTATGCTGTTGTTGGGATTGTTGTGCTACTTACTTCCAATGCTGTTCAAATATAGTGCTGCCTCAGCTGCTCTCACTGTGGACCCTTCACTCCACTTGTCAAGAGCTTCAAGCATTGTGATGTTGATTGCATATTTTGTTTACATTGTCTTTCAACTGTGGACACACAGGCAGCTATTTGAAGCTGAAGATGAGGATGAAGAGGGCAACGATGGTTCAGAAGAACAAGCTGTGATTGGATTATGGAGTGGCATTGCTTGGCTTATTGGATGA 858 0.4522 MASHQQEPWLLENGKPKVLTREMRHGRTAHSMSSNSLRKKSSRTLVSKVPCATFRNLLSNLQEVILGTKLSILIPAIPAAIFAECYGFGRPWVFILSLIGLTPLAERVSFITEQVAFYTGPTVGGLLNATCGNVTELIIAIFALSTNKIAVVKYSLLGSILSNLLLVLGTSLLCGGIANLGVEQKYDRRQADVNSLMLLLGLLCYLLPMLFKYSAASAALTVDPSLHLSRASSIVMLIAYFVYIVFQLWTHRQLFEAEDEDEEGNDGSEEQAVIGLWSGIAWLIG 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00891 285 Pfam Sodium/calcium exchanger protein 92 249 IPR004837 GO:0016020|GO:0055085
Pumo5g00891 285 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 24 284 IPR004713 GO:0006812|GO:0008324|GO:0016020
Pumo5g00891 285 FunFam Vacuolar cation/proton exchanger 121 265 - -
Pumo5g00891 285 Gene3D - 121 279 IPR044880 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00891 Pumo-Chr5 18588945 18591278 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g00891 1 285 Antiporters AT2G38170 65.646 1.92e-122 356
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g00891 K07300 - gmx:100779440 465.692
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g00891 5 18588945 18591278 Pumo5g00891 5 18588945 18591278 ECH
Pumo5g00891 5 18588945 18591278 Pumo7g01533 7 39080371 39113312 PCT