Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00886 ATGGCTATGGCAAATGGGAACGGCTCATTGAAGTTGAAGCCAAGTGAGACCAAGGGAAAGACCATCACTTGCAAAGCCGCGGTGGCATATGGTCCCCGAGAGCCCCTTGTGGTGGAAGATATTCTTGTTCATCCTCCTCAGAAAATGGAGGTTCGAATCAAAATCCTCTACACTTCCATTTGTCACACCGATCTTAGCGCGTGGCAAGGCCTGAACGAGGCTCAGCGTGCTTACCCTCGGATATTGGGCCACGAGGCATCCGGGATTGTGGAGAGTGTGGGGGAGGGTGTGAGTGAAGTGAATGAAGGGGACATTGTGGTGCCAATATTCAATGGGGAGTGTGGAGAGTGTTCTCTATGCAAGTGTGAGAGGACCAACATGTGTGAGAGGTTTGGGGTGAACCCAATGAAGAAGGTGATGGAAGGAGATGGCACAAGCAGGTTCTCCACCGTTGATGGAAAACCCATCTTCCATTTCTTGAACACTTCAACTTTTTCGGAGTACACGGTGGTTGATTCGGCTTGTGTGGTGAAGTTTGTTCACACTGATCACAGTCTCAGCCTCAAAAACCTCACCTTGCTCAGCTGCGGCGTCTCCACAGGGGTTGGAGCCGCTTGGAATACAGCTAATGTGCATTCTGGTTCAACTGTAGCTGTTTTTGGTTTAGGTGCTGTTGGCCTCGCTGTTGCAGAAGGGGCTCGAGCTAGAGGGGCATCCAAAATAATAGGCGTGGACATCAACCCTGACAAATTCATCAAAGCCCAAGCTATGGGAGTGACAGATTTCATAAACCCCAAGGATGAAGAGAAGCCAGTATACGAGAAAATTAGAGAAATGACTGATGGAGGTGTACACTACAGTTTTGAATGTACTGGAAACGTGGACGTTCTAAGGGATGCCTTCTTGTCTGCTCATGAGGGTTGGGGATTGACTGTAGTATTGGGAATTCATGCATCACCAAGGTTGCTTCCCATCCACCCAATGGAGCTCTTCGATGGTCGCAGTATTGTAGGATCAGTATTTGGAGGTTTCAAAGGAAAAAGTCACTTGCCTCATTTTGCCAAACAATGTGGACATGGAGTGGTGAAGCTGGATAATTTCATCACTCACGAGCTACCCTTTGAGGAGATAGACAAAGCCTTCGATCTTTTGATCACTGGGAAGTCACTGAGATGTCTTCTGCACTTCTAA 1191 0.4819 MAMANGNGSLKLKPSETKGKTITCKAAVAYGPREPLVVEDILVHPPQKMEVRIKILYTSICHTDLSAWQGLNEAQRAYPRILGHEASGIVESVGEGVSEVNEGDIVVPIFNGECGECSLCKCERTNMCERFGVNPMKKVMEGDGTSRFSTVDGKPIFHFLNTSTFSEYTVVDSACVVKFVHTDHSLSLKNLTLLSCGVSTGVGAAWNTANVHSGSTVAVFGLGAVGLAVAEGARARGASKIIGVDINPDKFIKAQAMGVTDFINPKDEEKPVYEKIREMTDGGVHYSFECTGNVDVLRDAFLSAHEGWGLTVVLGIHASPRLLPIHPMELFDGRSIVGSVFGGFKGKSHLPHFAKQCGHGVVKLDNFITHELPFEEIDKAFDLLITGKSLRCLLHF 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00886 396 FunFam Alcohol dehydrogenase 6 27 213 - -
Pumo5g00886 396 SUPERFAMILY GroES-like 17 220 IPR011032 -
Pumo5g00886 396 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 186 356 IPR036291 -
Pumo5g00886 396 Pfam Alcohol dehydrogenase GroES-like domain 50 177 IPR013154 -
Pumo5g00886 396 Pfam Zinc-binding dehydrogenase 224 343 IPR013149 -
Pumo5g00886 396 Gene3D - 201 339 - -
Pumo5g00886 396 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 83 97 IPR002328 GO:0008270|GO:0016491
Pumo5g00886 396 Gene3D - 27 391 - -
Pumo5g00886 396 FunFam S-(hydroxymethyl)glutathione dehydrogenase 201 339 - -
Pumo5g00886 396 PANTHER ALCOHOL DEHYDROGENASE 19 393 - -
Pumo5g00886 396 SUPERFAMILY GroES-like 346 396 IPR011032 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00886 Pumo-Chr5 18550162 18555305 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g00886 50 179 Monolignol Biosynthesis Gene Families AT4G39330 31.298 3.95e-11 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g00886 K00001 - gmx:100815166 709.138