Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00884 ATGGCTATGGCAAATGGGAACGGCTCATTGAAGTTGAAGCCAAGTGAGACCAAGGGAAAGACCATCACTTGCAAAGCCGCGGTGGCATATGGTCCCCGAGAGCCCCTTGTGGTGGAAGATATTCTTGTTCATCCTCCTCAGAAAATGGAGGTTCGAATCAAAATCCTCTACACTTCCATTTGTCACACCGATCTTAGCGCGTGGCAAGGCCTGAACGAGGCTCAGCGTGCTTACCCTCGGATATTGGGCCACGAGGCATCCGGTGAAGTGAATGAAGGGGACATTGTGGTGCCAATATTCAATGGGGAGTGTGGAGAGTGTTCTCTATGCAAGTGTGAGAGGACCAACATGTGTGAGAGGTTTGGGGTGAACCCAATGAAGAAGGTGATGGAAGGAGATGGCACAAGCAGGTTCTCCACCGTTGATGGAAAACCCATCTTCCATTTCTTGAACACTTCAACTTTTTCGGAGTACACGGTGGTTGATTCGGCTTGTGTGGTGAAGTTTGTTCACACTGATCACAGTCTCAGCCTCAAAAACCTCACCTTGCTCAGCTGCGGCGTCTCCACAGGGGTTGGAGCCGCTTGGAATACAGCTAATGTGCATTCTGGTTCAACTGTAGCTGTTTTTGGTTTAGGTGCTGTTGGCCTCGCTGTTGCAGAAGGGGCACGAGCTAGAGGGGCATCCAAAATAATAGGCGTGGACATCAACCCTGACAAATTCATCAAAGCCCAAGCTATGGGAGTGATAGATTTCATAAACCCCAAGGATGAAGAGAAGGCAGTATACGAGAAAATTAGAGAAATGACTGATGGAGGTGTACACTACAGTTTTGAATGTACTGGAAACGTGGACGTTCTAAGGGATGCCTTCTTGTCTGCTCATGAGGGTTGGGGATTGACTGTAGTATTGGGAATTCATGCATCACCAAGGTTGCTTCCCATCCACCCAATGGAGCTCTTCGATGGTCGCAGTATTGTAGGATCAGTATTTGGAGGTTTCAAAGGAAAAAGTCACTTGCCTCATTTTGCCAAACAATGTGGACATGGAGTGGTGAAGCTGGATAATTTCATCACTCACGAGCTACCCTTTGAGGAGATAGACAAAGCCTTCGATCTTTTGATCACTGGGAAGTCACTGAGATGTCTTCTGCACTTCTAA 1161 0.478 MAMANGNGSLKLKPSETKGKTITCKAAVAYGPREPLVVEDILVHPPQKMEVRIKILYTSICHTDLSAWQGLNEAQRAYPRILGHEASGEVNEGDIVVPIFNGECGECSLCKCERTNMCERFGVNPMKKVMEGDGTSRFSTVDGKPIFHFLNTSTFSEYTVVDSACVVKFVHTDHSLSLKNLTLLSCGVSTGVGAAWNTANVHSGSTVAVFGLGAVGLAVAEGARARGASKIIGVDINPDKFIKAQAMGVIDFINPKDEEKAVYEKIREMTDGGVHYSFECTGNVDVLRDAFLSAHEGWGLTVVLGIHASPRLLPIHPMELFDGRSIVGSVFGGFKGKSHLPHFAKQCGHGVVKLDNFITHELPFEEIDKAFDLLITGKSLRCLLHF 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00884 386 Pfam Zinc-binding dehydrogenase 214 333 IPR013149 -
Pumo5g00884 386 FunFam alcohol dehydrogenase 1-like isoform X1 32 190 - -
Pumo5g00884 386 PANTHER ALCOHOL DEHYDROGENASE 19 383 - -
Pumo5g00884 386 Pfam Alcohol dehydrogenase GroES-like domain 50 167 IPR013154 -
Pumo5g00884 386 Gene3D - 27 381 - -
Pumo5g00884 386 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 176 346 IPR036291 -
Pumo5g00884 386 Gene3D - 191 329 - -
Pumo5g00884 386 FunFam S-(hydroxymethyl)glutathione dehydrogenase 191 329 - -
Pumo5g00884 386 SUPERFAMILY GroES-like 17 210 IPR011032 -
Pumo5g00884 386 SUPERFAMILY GroES-like 336 386 IPR011032 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00884 Pumo-Chr5 18535308 18540442 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g00884 50 172 Monolignol Biosynthesis Gene Families AT4G37970 31.111 1.74e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g00884 K00001 - gmx:100815166 695.656