Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00880 ATGTTTTGCAATTGGTTTGGTGCTTTGAATTGGTGTGGGGGGAAAGATGATCCTGCAGACCAGCCACATGAACAAGTGGTTGCAACTAAAAAGTTTAGCTATAACTCGTTGAGATCAGCAACGGGAGATTTTCATCCTTCAAGCAAGATCGGTGGAGGAGGTTATGGAGTTGTCTACAAGGGAGTTTTAAGGGATGGTACTCAGGCTGCTATCAAGTCTCTTTCTGTAGAGTCTAAACAGGGAACCCGTGAATTTATGACAGAAATTGATATGATATCAAATATACGACATCCAAATCTTGTGGAACTGATTGGTTGCTGTGTTGAGGGTAGTCACCGAATATTGGTTTATGAATTTATGGAGAACAATAGCCTTGCGAGCTCTTTGCTTGGGTCAAAAAGTAAATATGTTGCTCTGGATTGGCCAAAGAGGGCTGCTATTTGTCGTGGCACGGCTTCTGGTCTAAGTTTTCTTCATGAAGAGGCTCAACCAAACATTGTTCACAGGGATATCAAGGCAAGCAACATATTGCTGGATGGGAACTTTAATCCAAAAATTGGGGATTTTGGTCTGGCAAAACTTTTTCCTGACAATGTCACCCATGTTAGTACTCGAGTTGCAGGAACAGTGGGATATCTTGCACCAGAATATGCACTTCTGGGACAACTTACAAAGAAGGCAGACGTGTACAGTTTTGGGATTCTCATGCTTGAAATAATCAGTAGGAAAAGTAGTAGCATAGCTGCATTTGAAGAGGATTATTTGGTTTTGGTGGAATGGGCTTGGAAGCTGAAAGGAGAAAACAGGCTTCTGGACCTTGTTGATTCAGAACTAAGTGAATATGATGAGAGTGAGGTGTATAGGTTCCTCATAGTGGCTCTATTTTGCACCCAATCAGCTGCTCAGCATAGACCAAGCATGAAGCAAGTATTGGAAATGCTTTCCAAGGAAGTTCATCTTAATGAGAAGGCACTGACTGAGCCTGGAATATACAGATGGCACAGCACTGGAAAGAAAGGTGGTTCTTTGAATGAGACATCATCTTCTCAAGCAATCAAGTACAAAAGAACCGAAAATCCACATGAAGCAACTTCAACTCACTTTAGTGGTACAGATTTTGTGACAGAGATGCTTCCAAGATGA 1143 0.4182 MFCNWFGALNWCGGKDDPADQPHEQVVATKKFSYNSLRSATGDFHPSSKIGGGGYGVVYKGVLRDGTQAAIKSLSVESKQGTREFMTEIDMISNIRHPNLVELIGCCVEGSHRILVYEFMENNSLASSLLGSKSKYVALDWPKRAAICRGTASGLSFLHEEAQPNIVHRDIKASNILLDGNFNPKIGDFGLAKLFPDNVTHVSTRVAGTVGYLAPEYALLGQLTKKADVYSFGILMLEIISRKSSSIAAFEEDYLVLVEWAWKLKGENRLLDLVDSELSEYDESEVYRFLIVALFCTQSAAQHRPSMKQVLEMLSKEVHLNEKALTEPGIYRWHSTGKKGGSLNETSSSQAIKYKRTENPHEATSTHFSGTDFVTEMLPR 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00880 380 Gene3D Phosphorylase Kinase; domain 1 16 119 - -
Pumo5g00880 380 Gene3D Transferase(Phosphotransferase) domain 1 120 328 - -
Pumo5g00880 380 SMART serkin_6 44 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g00880 380 Pfam Protein tyrosine and serine/threonine kinase 47 314 IPR001245 GO:0004672|GO:0006468
Pumo5g00880 380 CDD STKc_IRAK 63 316 - -
Pumo5g00880 380 FunFam Putative LRR receptor-like serine/threonine-protein kinase 120 326 - -
Pumo5g00880 380 ProSiteProfiles Protein kinase domain profile. 44 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g00880 380 SUPERFAMILY Protein kinase-like (PK-like) 24 314 IPR011009 -
Pumo5g00880 380 FunFam cold-responsive protein kinase 1 15 119 - -
Pumo5g00880 380 ProSitePatterns Protein kinases ATP-binding region signature. 50 72 IPR017441 GO:0005524
Pumo5g00880 380 MobiDBLite consensus disorder prediction 356 380 - -
Pumo5g00880 380 ProSitePatterns Serine/Threonine protein kinases active-site signature. 166 178 IPR008271 GO:0004672|GO:0006468
Pumo5g00880 380 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 29 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00880 Pumo-Chr5 18405660 18413096 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g00880 32 329 Receptor kinase-like Gene Family AT1G56120 53.356 1.97e-104 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Pumo5g00880 PK_Tyr_Ser-Thr 7.4e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g00880 - - gmx:100785766 719.153