Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00869 ATGGATTCGTCGAAGTCTGATAAAGCTACAACGCCACCTTTTATGATAGAGGAGAAGGTTCCAACTAAAGTTAAGTCTTCTGAAACTGAGGGAATTGCCAACGTGAAGGGTAAGAAACAAGGGAATGTTTCTCTGCTTGCAGGTACATCATCAAGAGCAATTGTAATTACAGGAGCAACACTAGGCCCATTCTTTTTTGCAGTTGTGGCTGTTGCAGTGGTTTCCGTTTACATCTCTTACAGAATACGAAAGGCAAATCAAGCAATGATGGAAAAGTTTTTGAAAGACTACAAAGGTTTCACGCCTACGAGATACTCTTATAACGAGCTTAAGAAAATTACAAATCACTTTGCAGAGAGATTAGGAGAAGGAGCTTATGGAGCGGTATTCAAAGGAAGGATTTCAGAAGATATAACAGTTGCAGTGAAAATCCTCAAAGTTTCGTACGGAAACGGGGAAGAGTTCATAACCGAAGTTAAAACGCTATGCAGAATCCATCACATAAACGTGGTTCGGCTTGTTGGCTACTGTGCTGAATGTTGCAGAAGAGCTCTTGTTTATGAGTTCTCACCAAATGGTTCACTTGACAGGTTCATAACTTCACCAGACAACACCAATTTCCTCGGGTGGCCAAAGTTGGAGGCAATTGCTATAGGCATAGCTAAAGGAATTGAATACCTTCATCAAGGGTGTGACCAACGGATCCTCCATTTTGATCTAAAACCTCAAAACATTCTGCTAGACCACAACTTCACTCCCAAAATCTGTGACTTCGGCTTGGCTAAGCTCTGCGCCAAGGCGCAGAGCGCGGTGTCGATTTCAACAGTTAAAGGGACGATGGGCTACATTGCGCCAGAAGTCTTCTCTCGATGTTTCGGAAGCGTGTCTTGCAAGTCAGATGTTTACAGTTTTGGAATGGTGCTGCTTGAAATGATAGGAGGGAGGAAGGTAACTGGAGTCACTGCAGGGAACAACAGAAGCAGCGATGTGTGTTACCCAAGTTGGATCTACAATCTCTTGGAAGAAAGAGATGACATAAGAGTTTGTGTTGAGGAAGAAGGGGATGCTGAAATTGCCAAGAAACTCGCAATTGTGGGGCTCTGGTGCATTCAGTGGCACCCTGTGGATCGTGTGTCCATCACTGTTGCGGTTCAGATGTTGGAAAGCGATGGACAAGGCTTAACAATTCCTCCCAATCCTTTTGCTGCCTCAATTCCAGCAAGACAAGATACCAACATCTCTACTAGGCGCGTCACTCCAGAATTGGAAGTTATCCAAGAAGAGGAGTAG 1290 0.4411 MDSSKSDKATTPPFMIEEKVPTKVKSSETEGIANVKGKKQGNVSLLAGTSSRAIVITGATLGPFFFAVVAVAVVSVYISYRIRKANQAMMEKFLKDYKGFTPTRYSYNELKKITNHFAERLGEGAYGAVFKGRISEDITVAVKILKVSYGNGEEFITEVKTLCRIHHINVVRLVGYCAECCRRALVYEFSPNGSLDRFITSPDNTNFLGWPKLEAIAIGIAKGIEYLHQGCDQRILHFDLKPQNILLDHNFTPKICDFGLAKLCAKAQSAVSISTVKGTMGYIAPEVFSRCFGSVSCKSDVYSFGMVLLEMIGGRKVTGVTAGNNRSSDVCYPSWIYNLLEERDDIRVCVEEEGDAEIAKKLAIVGLWCIQWHPVDRVSITVAVQMLESDGQGLTIPPNPFAASIPARQDTNISTRRVTPELEVIQEEE 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00869 429 ProSitePatterns Serine/Threonine protein kinases active-site signature. 235 247 IPR008271 GO:0004672|GO:0006468
Pumo5g00869 429 FunFam PR5-like receptor kinase 190 398 - -
Pumo5g00869 429 SUPERFAMILY Protein kinase-like (PK-like) 99 388 IPR011009 -
Pumo5g00869 429 FunFam serine/threonine-protein kinase PBS1-like 83 189 - -
Pumo5g00869 429 Gene3D Transferase(Phosphotransferase) domain 1 191 393 - -
Pumo5g00869 429 Gene3D Phosphorylase Kinase; domain 1 88 189 - -
Pumo5g00869 429 ProSiteProfiles Protein kinase domain profile. 115 402 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g00869 429 PANTHER RUST RESISTANCE KINASE LR10-RELATED 87 407 IPR045874 GO:0004672
Pumo5g00869 429 Pfam Protein kinase domain 118 385 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g00869 429 ProSitePatterns Protein kinases ATP-binding region signature. 121 143 IPR017441 GO:0005524
Pumo5g00869 429 SMART serkin_6 115 387 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00869 Pumo-Chr5 17649415 17654047 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g00869 59 406 Receptor kinase-like Gene Family AT1G66910 43.889 1.48e-103 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Pumo5g00869 Pkinase 4.5e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g00869 - - qsu:112017070 498.819