Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00867 ATGAGAACCCGTTTTCCCCCCACACGGGTCATCTTCGTGGCCTCGCTCTGTTTCCTCGCAAGCTTCTCCGAATTAATTGAAGCCAAAACCATCGACCCCTACAAGGTTCTTGGGGTTGATAAAAATGCAAGTCAGCGGGAAATTCAGAAGGCTTTTCACAAGCTATCTCTTCAGTATCACCCTGACAAGAACAAATCCAAGGGTGCACAAGAGAAGTTTTCTCAGATCAATAATGCGTATGAGATTTTATCTGACGAAGAAAAGAGAAAGAATTATGACATGTATGGAGATGAGAAAGGAAATCCTGGATTTCAAGGTGGCCATCCTGGAGGTCAGGGTGGATATACTTATTTTACAGGGGGTGGTCCTGGACAAAGCCATTTTAACTTCAAACAAGGGGGGGACTGGCAGGGTATGGGTGGGCAAGGAGGATCTAAGTCATTCTCCTTTTCCTTTGGCGGCTCAGGCGATTCCAATCCTTTTGGATTTGGCTTGGATGATCTTTTTGGCAGTTTTTTTGGTGGTGGAGGTGGTGGGAGTCAGTTTGGTGGTTTTGGCAGTTCAGCCAAGTCTCAATCTGGGTCCAAGAGTTCTGCCAAAAGTCTTAGAGCTATAAATTCACAGATATACAAAAAAGAAATAGAAAATGCAGGGATGACTTGGCTTTTATTATCTTATGTACCCTCATCGAAGGAGATCCAATACTTTGAATCCACTATAGAGGAGGTTGCCAGTTCATTGCAGGGAGCTTTGAAGGTTGGAAGCATTAACTGTGAAAAGGAAGTCTCATTCTGTAAGGAGCTTGGCATATATCCACGCAGAGCTCCAAGGCTTTTTGTTTATTCTTACAAGGAGAATGAAAAAGGTTCCTTCGTGGAGTACAGTGGAGACTTGGCTGCCAAGATTTTGAAGGCTTTCTGTCAAGAACACTTGCCAAGGTTTTCAAAACGAACCGACTTGAATCATCTTGATCAATTCAGCACTACTGGAAAGTTGCCTAGGGTGCTGCTTCTCTCCACCAAGAAGGACACTCCTGTAATTTGGCGTGTCCTTAGTGGCTTGTATCACAAACGCATTACTTTCAGTGATACAGAGGTTCATGATGTTTCTGATCCAAGAGTGAAAACGCTAGGAGTTGATGTACTTCCAGCTATTGTAGGTTGGCTACCTAATGGCGAAAAGCGTGTTCTGAAAACTGGGATTTCTGTGAAAGATTTAAAATCTGCAGTTCTTGATCTTAGTAACATACTTGATAGTTTTGAAAAAGTAAGTAAAAAGGAATCATCAGGTCAAGCCAAGAAGGCACAAACTAATTCAGACGAGGGACTTGTACCATTACTTTCTAAGTCAAACTTTGAGGCTCTTTGTGGTGAGAAAACTCCTGTCTGCATAATTGGTGCCTTCAGATCTTCCAAAGCTAAAGAAAAGCTAGAATCAATCCTCTCCTTGGTCTCTCAAAAATCTTTGTCAAGACGACCAAATCAGGGATCCAGCAGCTCTAGGGACTCCATTTCCTATGCTCTCTTAGATGCTGCAAAGCAACAGTCATTTCTAAAGGCATTTGACAAAACTGGTTATAAATCATCAAATAAGTTGTTGATTGCATACAAACCTCGTAGAGGGAAGTACAGTGTATTTATGGGTGAAATGACAGTAGAGGAGGTAGAGAATTTCATTAGCTCCGTTCTCAGTGGAGATATACCCTTCAGAGAAACAACACGCGGGAAGCCTGTACTTGAGTATTAG 1746 0.4244 MRTRFPPTRVIFVASLCFLASFSELIEAKTIDPYKVLGVDKNASQREIQKAFHKLSLQYHPDKNKSKGAQEKFSQINNAYEILSDEEKRKNYDMYGDEKGNPGFQGGHPGGQGGYTYFTGGGPGQSHFNFKQGGDWQGMGGQGGSKSFSFSFGGSGDSNPFGFGLDDLFGSFFGGGGGGSQFGGFGSSAKSQSGSKSSAKSLRAINSQIYKKEIENAGMTWLLLSYVPSSKEIQYFESTIEEVASSLQGALKVGSINCEKEVSFCKELGIYPRRAPRLFVYSYKENEKGSFVEYSGDLAAKILKAFCQEHLPRFSKRTDLNHLDQFSTTGKLPRVLLLSTKKDTPVIWRVLSGLYHKRITFSDTEVHDVSDPRVKTLGVDVLPAIVGWLPNGEKRVLKTGISVKDLKSAVLDLSNILDSFEKVSKKESSGQAKKAQTNSDEGLVPLLSKSNFEALCGEKTPVCIIGAFRSSKAKEKLESILSLVSQKSLSRRPNQGSSSSRDSISYALLDAAKQQSFLKAFDKTGYKSSNKLLIAYKPRRGKYSVFMGEMTVEEVENFISSVLSGDIPFRETTRGKPVLEY 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00867 581 SUPERFAMILY Chaperone J-domain 24 100 IPR036869 -
Pumo5g00867 581 Gene3D Glutaredoxin 442 569 - -
Pumo5g00867 581 Gene3D DnaJ domain 29 184 IPR036869 -
Pumo5g00867 581 ProSiteProfiles dnaJ domain profile. 32 96 IPR001623 -
Pumo5g00867 581 SMART dnaj_3 31 88 IPR001623 -
Pumo5g00867 581 PANTHER DNAJ PROTEIN ERDJ3A 10 579 - -
Pumo5g00867 581 Gene3D Glutaredoxin 200 312 - -
Pumo5g00867 581 CDD DnaJ 32 85 IPR001623 -
Pumo5g00867 581 SUPERFAMILY Thioredoxin-like 204 312 IPR036249 -
Pumo5g00867 581 SUPERFAMILY Thioredoxin-like 442 568 IPR036249 -
Pumo5g00867 581 PRINTS DnaJ domain signature 88 107 IPR001623 -
Pumo5g00867 581 PRINTS DnaJ domain signature 52 67 IPR001623 -
Pumo5g00867 581 PRINTS DnaJ domain signature 68 88 IPR001623 -
Pumo5g00867 581 PRINTS DnaJ domain signature 34 52 IPR001623 -
Pumo5g00867 581 Pfam DnaJ domain 32 93 IPR001623 -
Pumo5g00867 581 ProSitePatterns Nt-dnaJ domain signature. 73 92 IPR018253 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00867 Pumo-Chr5 17611581 17614865 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g00867 34 95 C2H2 Transcription Factor Family AT1G74250 41.176 9.24e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g00867 - - gmx:100785691 914.064