Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00846 ATGGAGGGTCATCATCTCCATCACCATCATCGGCATCAACAACAACAACAACAACAACAACATCATCAACAACAGCATCACCACCCTCATCACAACATCACAACTAGTGCCACTGCTAACGTGGATGCCACGGATAGGTTCCCCCAATGGAGCATCCTGGAGACAAAAGAGTTCCTTGTGATCCGTGCCGAGCTGGATCAGACTTTCATGGAGACAAAGAGGAACAAGCAGCTCTGGGAAGTCATCTCCAACCGGATGAAGGAAAAGGGTTTCCATAGAAGTGCAGAACAGTGCAAGTGCAAGTGGAAAAACCTCGTTACACGCTATAAGGGATGTGAAACGATGGAGCCGGAAGCTATGAGGCAGCAATTCCCGTTTTACAACGAGCTTCAAGCGATTTTCGAGGCGAGGATGCAGAGAATGCTGTGGGCTGAGGCAGAAGGAGTGTCCAAGAAGAAGGGGGTGCACTTTTCATCAGATGATGAGGAAGAGGGCAATGAAGAGAGCGAGGGAGATCACAAGGGTAACATCAGAAAAAAGAAGAACAAGGGCAAGATGGTAATTGGTGGAGCAAGTGGTAACAACAGTAACTTGGAGAGTTTGAAGGAGATCATGGATGAGTTCATGAGGCAGCAGATGCAAATGGAGGCACAGTGGATGGAGGCATTTGAGGCAAGGGAGAATGAGAGGAGGTTGAAGGAGATGGAGTGGAGGCAAACCATGGAGGCATTGGAGAATGAGAGGATAATGATGGACCAGAGATGGAGGGAGAGGGAAGAACAAAGAAGGATTAGAGAGGAAGTTAGGGCTGACAAGAGAGATGCTCTAATCACTGCTCTTCTGAACAAGCTCAGAAGAGAGGAGATGTAG 870 0.4816 MEGHHLHHHHRHQQQQQQQQHHQQQHHHPHHNITTSATANVDATDRFPQWSILETKEFLVIRAELDQTFMETKRNKQLWEVISNRMKEKGFHRSAEQCKCKWKNLVTRYKGCETMEPEAMRQQFPFYNELQAIFEARMQRMLWAEAEGVSKKKGVHFSSDDEEEGNEESEGDHKGNIRKKKNKGKMVIGGASGNNSNLESLKEIMDEFMRQQMQMEAQWMEAFEARENERRLKEMEWRQTMEALENERIMMDQRWREREEQRRIREEVRADKRDALITALLNKLRREEM 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00846 289 Pfam Myb/SANT-like DNA-binding domain 49 133 IPR044822 -
Pumo5g00846 289 CDD GT1 48 113 - -
Pumo5g00846 289 Coils Coil 198 218 - -
Pumo5g00846 289 MobiDBLite consensus disorder prediction 1 38 - -
Pumo5g00846 289 MobiDBLite consensus disorder prediction 1 16 - -
Pumo5g00846 289 Gene3D - 50 111 - -
Pumo5g00846 289 ProSiteProfiles Myb-like domain profile. 50 106 IPR001005 -
Pumo5g00846 289 MobiDBLite consensus disorder prediction 153 194 - -
Pumo5g00846 289 PANTHER FI21293P1 10 285 - -
Pumo5g00846 289 FunFam Zinc finger and SCAN domain-containing 20 50 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00846 Pumo-Chr5 16847304 16848769 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g00846 36 287 Trihelix Transcription Factor Family AT5G01380 53.004 1.08e-74 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Pumo5g00846 Myb_DNA-bind_4 8e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g00846 - - gmx:100778195 422.935