Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00845 ATGGCATGTGAGAGAGTTGATATCAATGTTTTGGTTGTTGATAATGATGATACTTCTTTGGCCCTTGTTGCTAATATACTCAACTCATTGGGATACAAAGTTCTCACTGCCAACAGCGCCCTAAATGCTTTGGAGATTCTTAGAGAGTCTGAAGGCTTTATTGATCTCGTCATTACAGAACTTCATATATCTGGGATGAATGGATTTGAATTTCAAAACTCTGTTCAAAATGAATTCCACACACCAGTGATAATTATTTCTGCAGATGCAAGAAATAGTGTAATTTCCAAGAGTTTAGCAAATGGTGCAATACACTATATTTTGAAACCCTTTTGTGCAGACGACTTCAAAGACATTTCGCAGTATGCTATGGCTGCAAGGAATAGGAAACTAACTACTAATGAAAATATTGAAGGGGAGTCAATACCAAGTGATAACATTTCTATTCAGGATGATAACTCTGCAACATCATCGAATGTGAACAACAGAAAAAGGATACATTGCCAAAGTGAAGAAAGATCTCGGCTGGTAAAGAAACCAAAGGTTGTTTGGACAGAAGATCTTCACAACCGCTTTCTGCTTGCCATAAAACAAGTTGGAATGGAGAAGGCTGTGCCAGCGGCAATTCTTGAAGTCATGAACGAGCCAAACTTGACAAGAGAAAATGTTGCCAGCCACTTACAGAAGTATCGCATGTTCCTGAGAAAAGCTGCAGAGAAAGGAATGCTTGAGGGCTTATCTGACAGGGATCTGAGGTCAAGGTTTGCCTCTGGCCTTTCAGAATCAATGATCAAAGACTTCCAAGCAATAGCTGCGAAATGGCGTGTTCCTGTGAAGCAAACAGGGTATGGAGGGACATCCAATGCTGTTAATCCTTACAGCCATGTTTCAAGAAGTACTAATTATGTGACTAATAATACTCCACTTGGAAGATGCCATCAATTTCCCCAACCATCACACATGGGCTTGAATATGATGTTTCAAAACCAGCATGGTAATGGTAATTCTTTGAATCAAGCAAGACTTGGAGTACAATCAAGCATTGGAACCAATGCTCGGGTCAACAATATCCAGCAAAAAATGTTGGGAAGCTATGCAAACCAACCATATTATGCAAAAAGCTCCTACAACAATGCCAGTGCTGTCTTACCATCAGGTGGATTAATGAGGCATGGCTTGATGACTTTTGCAAATGGCCTAAGATTAGGTGTGAACTATGGTGACAATCAATTGATGTATCCAAACTATAGTTCATTAGGGAATCATCAAAAGTTTAGCTATGGTCAAGGAAATTGGAACATGGGATCTTTGAACAACTCTAATAATAATCTGCCTTGGACAGCTTCTACTTATAATCCCAGCGGTAACATTCAACTGAATGGTGGATCACAAGTAGTTGGAAATGGAATACAAGGAGGGTTTAACAGTACTCTTGGTGTTATGGATTCTATTGCAAACAACAGTAGCTTTGGCTTGACAACTCAAACTGCAAATAAGAATGTGACACCCTTGGGGCAAGGAAACTTTGGATTGGCTCAAGGAGGGTTTGCTTTTGCTTCTGCTTCTGCTTCTACTTCTACTTCTAGTGCTGGGGAGGGCTCCTCAAGTGAGGTTCCTGCAGCATTAATAACTAATAATGGAACTGAAGCAGAAAATATTCAAGGGAACCCACAACTGCCTCAGCAACTACATGGCAGTGTTGCAGAAAATGATAATGCTACTTCAATCGGTGAGGGCAATGTCCACCTAGGTCGAAGAAAGGATCGCCAGAACGCCGCCGACAACGTAGGAAATCTTGGAGATCGCACGAAATGA 1815 0.4083 MACERVDINVLVVDNDDTSLALVANILNSLGYKVLTANSALNALEILRESEGFIDLVITELHISGMNGFEFQNSVQNEFHTPVIIISADARNSVISKSLANGAIHYILKPFCADDFKDISQYAMAARNRKLTTNENIEGESIPSDNISIQDDNSATSSNVNNRKRIHCQSEERSRLVKKPKVVWTEDLHNRFLLAIKQVGMEKAVPAAILEVMNEPNLTRENVASHLQKYRMFLRKAAEKGMLEGLSDRDLRSRFASGLSESMIKDFQAIAAKWRVPVKQTGYGGTSNAVNPYSHVSRSTNYVTNNTPLGRCHQFPQPSHMGLNMMFQNQHGNGNSLNQARLGVQSSIGTNARVNNIQQKMLGSYANQPYYAKSSYNNASAVLPSGGLMRHGLMTFANGLRLGVNYGDNQLMYPNYSSLGNHQKFSYGQGNWNMGSLNNSNNNLPWTASTYNPSGNIQLNGGSQVVGNGIQGGFNSTLGVMDSIANNSSFGLTTQTANKNVTPLGQGNFGLAQGGFAFASASASTSTSSAGEGSSSEVPAALITNNGTEAENIQGNPQLPQQLHGSVAENDNATSIGEGNVHLGRRKDRQNAADNVGNLGDRTK 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00845 604 CDD REC_typeB_ARR-like 10 123 - -
Pumo5g00845 604 MobiDBLite consensus disorder prediction 571 604 - -
Pumo5g00845 604 Gene3D - 7 140 - -
Pumo5g00845 604 Pfam Myb-like DNA-binding domain 182 231 IPR001005 -
Pumo5g00845 604 PANTHER TWO-COMPONENT RESPONSE REGULATOR 9 343 IPR045279 GO:0009736
Pumo5g00845 604 ProSiteProfiles Response regulatory domain profile. 9 124 IPR001789 GO:0000160
Pumo5g00845 604 SUPERFAMILY Homeodomain-like 177 236 IPR009057 -
Pumo5g00845 604 MobiDBLite consensus disorder prediction 138 162 - -
Pumo5g00845 604 NCBIfam myb-like DNA-binding domain, SHAQKYF class 179 232 IPR006447 GO:0003677
Pumo5g00845 604 SUPERFAMILY CheY-like 8 127 IPR011006 -
Pumo5g00845 604 Gene3D - 176 237 - -
Pumo5g00845 604 SMART REC_2 8 120 IPR001789 GO:0000160
Pumo5g00845 604 Pfam Response regulator receiver domain 10 117 IPR001789 GO:0000160
Pumo5g00845 604 FunFam Two-component response regulator 175 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00845 Pumo-Chr5 16807269 16812365 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g00845 6 274 Response Regulator Gene Family AT5G07210 35.294 5.26e-45 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Pumo5g00845 Response_reg 5.4e-19 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g00845 - K14491 gmx:102663776 619.772