Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00842 ATGGTGGTAGGAGCTTGGTACAGTATACTTATTATCTTTTGGACTTATCTCAGCATTGCAATTGTGTCAGATGCAGCACCTGATCAATCATCACCATTGGACGTAGAAGCACACACTCTTGTTGAAAGTGAGTGGTGGAGTGGCTACACTAACCATGCTCCAACTCGTTGCTACTGGCCAGGCATTGCATGCAACAATGCTGGAAGTATCACAAACATTACTTTGCCTGATGAACTCCAATTGGGAAACAAGTTGGGGAGATTCAACTTTTCTTGCTTCCCAAACCTTGTCCACCTCCACCTTGCTGCACATGGAATCACAGGGAACATTCCATATGGTCTAGGTACCCTTTCCAAACTCATACATCTTGACTTATCCTCTAATGATATAAAGGGAACTATACCATCTGATATTTGGAATCTAAGGAATCTGGTGACCCTGAACTTGGCTAAAAACAAACTTAATGGTTCAATTCCACCTTCTGTGGGTCAGCTGACTAAGATAAACTATCTGTTCCTTGATAGCAATCAAATTAGTGGACTTATCCCTTTGGAGTTAGGAAAGCTGAGGAATCTGATTCATTTGGGTTTAAGCAGTAATAGTTTTATTGGTCCAATACCTGGGGAGATTGGTCTATTGAACAATTTGGAATATCTGTCCCTCAGTGAGAACAAGTTGAATGGTTCCATACCTTTAGAAATAGGGAATTTGCACAAACTTCTAATTCTAGATCTTAATACTAACAGTCTCACGGGTGAAATACTTTCAGTCTTGCGTAATCTTGCAAATTTGACAGAACTAAACTTGTCCAATAATGTGATTTCTGACATGATCCCACAAAAGCTTACCCAATTGACCCAATTGAAGTATCTACGTATTTCAAATAACAAAATTTTTGGTGCAATGCCTCCTGACATTGGAAAACTGTCTAAACTCTTGGTTCTAGACCTGTCTAGAAACATGTTGACAGGAGAAATCCCAGCCAGTATTTCTAATTGCTCTAACCTGCAGGAGTTAATTTTGAGCCATAACAATATAACAGGAACCATTCCCAGTTCCCTAGTCTCATTGGGGAGGGTAGACTTGTCATACAACTCTCTAGAGGGTGAAATCCCAGTTGCTCTCCAAAATTCTTTGCCACCTGATGCATTCAGTGGCAATGAGAATTTGTGTAGCAGCATCGCCCCTTTCCCTTCTTGTTATTCCTCTCCTCGCAAACTAAATAATATAGATTTGGGATTGGAAATGAAGATTTTCCTTCCTCCAACTGCTTTGCTTGCTCTTCTATGCTCTGCATATGTGTTCCTCCGCTGGTGTAAGGCTGGGAATTGCATGTCCGTATCCAAAGAAACAAAGAATGGTGACATGTTTTCAATATGGAACTATGATGGTAAAATTGCATACAAAGACATAATTGAAGCAACAGAGGATTTTGACATCAAATACTGCATAGGGGCAGGTGGTTATGTTAGTGTCTACAAAGCTCAACTACCTAGTGGTAGAGTAGTGGCCTTGAAGAAACTCCACAATTTAGAAGCAGATGAACCTACAATCTGCAGGATTTTCAAGAATGAAGTAAGAATCTTGACAAAGATAAGGCATAGAAATATTGTGAAGCTTTATGGATTCTGCTTGCACAACAAATGCATGTTTCTGGTTTTGGAGTACATGGAGAGGGGAAGCTTGTATTGCATTCTCCACAATGACATTGAAGCTGTGGAGTTGGATTGGACCAAGAGGGTCAACATTGTGAAAGGCATAGCACATAGCTTGTCATACCTTCACCATGATTGCAAGCCAGCAATTATTTATAGAGATGTAACAACCAAAAATGTTCTCTTGAATTTAGAATTGGAGGCATGTCTCTCTGACTTTGGCATAGCCAGACTTCAAAATTCTGGTTCCTTCAATCGAACAGTACTTGCTGGCACTTACGGATATATTGCACCAGAACTTGCCTACAGCGATTTTGTGACTAAGAAATGTGATGTTTACAGCTTTGGAGTGGTTACTCTTGAAATTATCATGGGAAAACATCCTGGAGAACTTCTTTCCTCGTTAAGCTCTGCATCCTCACAAGACATTTTCCTCAAAGATATATTAGACCACCGATTAATATCCACCATCAATAAACAATCTGCTCAGAGTTTAGCTCTTATAGCAACACTAGCCTTTGAATGTCTTCATTCTCTGCCAAGGCTTAGACCAACAATGCAAGTAGTGTGTGACAAACTTGTCACGGGAAAGCCCCGATTAACCAAACCATTTGAAGAAATTTCAATAAAGCAGATTTTAAATCAGGAATTGTAA 2310 0.3987 MVVGAWYSILIIFWTYLSIAIVSDAAPDQSSPLDVEAHTLVESEWWSGYTNHAPTRCYWPGIACNNAGSITNITLPDELQLGNKLGRFNFSCFPNLVHLHLAAHGITGNIPYGLGTLSKLIHLDLSSNDIKGTIPSDIWNLRNLVTLNLAKNKLNGSIPPSVGQLTKINYLFLDSNQISGLIPLELGKLRNLIHLGLSSNSFIGPIPGEIGLLNNLEYLSLSENKLNGSIPLEIGNLHKLLILDLNTNSLTGEILSVLRNLANLTELNLSNNVISDMIPQKLTQLTQLKYLRISNNKIFGAMPPDIGKLSKLLVLDLSRNMLTGEIPASISNCSNLQELILSHNNITGTIPSSLVSLGRVDLSYNSLEGEIPVALQNSLPPDAFSGNENLCSSIAPFPSCYSSPRKLNNIDLGLEMKIFLPPTALLALLCSAYVFLRWCKAGNCMSVSKETKNGDMFSIWNYDGKIAYKDIIEATEDFDIKYCIGAGGYVSVYKAQLPSGRVVALKKLHNLEADEPTICRIFKNEVRILTKIRHRNIVKLYGFCLHNKCMFLVLEYMERGSLYCILHNDIEAVELDWTKRVNIVKGIAHSLSYLHHDCKPAIIYRDVTTKNVLLNLELEACLSDFGIARLQNSGSFNRTVLAGTYGYIAPELAYSDFVTKKCDVYSFGVVTLEIIMGKHPGELLSSLSSASSQDIFLKDILDHRLISTINKQSAQSLALIATLAFECLHSLPRLRPTMQVVCDKLVTGKPRLTKPFEEISIKQILNQEL 769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00842 769 SUPERFAMILY L domain-like 56 411 - -
Pumo5g00842 769 SUPERFAMILY Protein kinase-like (PK-like) 457 745 IPR011009 -
Pumo5g00842 769 ProSiteProfiles Protein kinase domain profile. 478 752 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g00842 769 FunFam Leucine-rich repeat receptor-like protein kinase 557 754 - -
Pumo5g00842 769 ProSitePatterns Tyrosine protein kinases specific active-site signature. 602 614 IPR008266 GO:0004672|GO:0006468
Pumo5g00842 769 Gene3D Phosphorylase Kinase; domain 1 440 556 - -
Pumo5g00842 769 ProSiteProfiles Leucine-rich repeat profile. 335 357 IPR001611 GO:0005515
Pumo5g00842 769 ProSiteProfiles Leucine-rich repeat profile. 263 286 IPR001611 GO:0005515
Pumo5g00842 769 FunFam Leucine-rich repeat receptor protein kinase MSP1 442 556 - -
Pumo5g00842 769 Gene3D Transferase(Phosphotransferase) domain 1 557 758 - -
Pumo5g00842 769 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 78 280 - -
Pumo5g00842 769 Pfam Leucine rich repeat 308 346 IPR001611 GO:0005515
Pumo5g00842 769 Pfam Leucine rich repeat 94 154 IPR001611 GO:0005515
Pumo5g00842 769 Pfam Leucine rich repeat 243 298 IPR001611 GO:0005515
Pumo5g00842 769 Gene3D Ribonuclease Inhibitor 31 181 IPR032675 -
Pumo5g00842 769 Gene3D Ribonuclease Inhibitor 182 278 IPR032675 -
Pumo5g00842 769 Gene3D Ribonuclease Inhibitor 279 400 IPR032675 -
Pumo5g00842 769 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 281 400 - -
Pumo5g00842 769 Pfam Protein kinase domain 482 743 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g00842 769 SMART LRR_typ_2 261 285 IPR003591 -
Pumo5g00842 769 SMART LRR_typ_2 117 140 IPR003591 -
Pumo5g00842 769 SMART LRR_typ_2 141 165 IPR003591 -
Pumo5g00842 769 SMART LRR_typ_2 309 333 IPR003591 -
Pumo5g00842 769 SMART LRR_typ_2 354 386 IPR003591 -
Pumo5g00842 769 SMART LRR_typ_2 213 237 IPR003591 -
Pumo5g00842 769 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 163 746 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00842 Pumo-Chr5 16680453 16683199 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g00842 96 650 Receptor kinase-like Gene Family AT4G08850 40.669 1.96e-128 405
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Pumo5g00842 Pkinase 9.1e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g00842 - - gmx:102670020 994.186