Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00839 ATGGCCTTCCCACCTTCTCACAGTTTCACGTTTAACACTACTCATGAAGAAGATCACAACCACCTCCCTTCAACCTCTCTCAACGCCTTCCCCTCTTTGCCACCCCAACACTTTCAAGGGGGTGCACCTTTCATGTTGAAGCGGTCCATGTCGTTTTCAGGCATTGAGAACAAGTGTGATGAAGTGCACGGAGAAGATGAGATATCCGATGATGGGATCTTTCAGTGTGGGGAGAAGAAGAAGATCAGACTGAATTTGGAACAGGTGAAGGCCCTTGAGAAGAGTTTTGAGTTGGGGAACAAGATTGAGCCAGAAAGGAAAGTGCAGTTAGCTAAGGCTTTGGGGTTGCAGCCAAGACAAATTGCCATATGGTTTCAGAATAGAAGGGCCAGATGGAAAACCAAGCAATTGGAGAAGGAATATGAAGTCCTCAAGAAGCAGTTTGAGGCAGTCAAGGCTGATAATGATGTTCTTAAGGTTCAGAACCAGAAACTACAGGCAGAGTTACAAGCTGTTAAAAGTAGGGATTGGTGTGAAGTTGGAATGATGAGCCTTAAGAAAGAAACCGAGGGTTCATGGAGCAATGGAAGTGATAACAGCCTAGACATTAATCTAGATCTCTCAAGAACACTAGGTTTGAACCTTCCTATATCTTCTCAGAACGGTAAAAACCTACTACCCAATTCGTTAAAGCCGACCAGCATAACCCAACTCCTTCAAGATGATGGCTTGTGCAACATGTTTCACAACATTGATGCACAACAGAACTTTTGGCTCTGGCCTGATCAGCTGCACCACCAGCGTTTCCAATGA 813 0.449 MAFPPSHSFTFNTTHEEDHNHLPSTSLNAFPSLPPQHFQGGAPFMLKRSMSFSGIENKCDEVHGEDEISDDGIFQCGEKKKIRLNLEQVKALEKSFELGNKIEPERKVQLAKALGLQPRQIAIWFQNRRARWKTKQLEKEYEVLKKQFEAVKADNDVLKVQNQKLQAELQAVKSRDWCEVGMMSLKKETEGSWSNGSDNSLDINLDLSRTLGLNLPISSQNGKNLLPNSLKPTSITQLLQDDGLCNMFHNIDAQQNFWLWPDQLHHQRFQ 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00839 270 FunFam Homeobox-leucine zipper protein ATHB-13 70 139 - -
Pumo5g00839 270 SUPERFAMILY Homeodomain-like 74 137 IPR009057 -
Pumo5g00839 270 Pfam Homeobox associated leucine zipper 135 174 IPR003106 GO:0006355|GO:0043565
Pumo5g00839 270 Gene3D - 78 141 - -
Pumo5g00839 270 ProSiteProfiles 'Homeobox' domain profile. 75 135 IPR001356 GO:0003677
Pumo5g00839 270 SMART HOX_1 77 139 IPR001356 GO:0003677
Pumo5g00839 270 ProSitePatterns 'Homeobox' domain signature. 110 133 IPR017970 GO:0000981|GO:0006355
Pumo5g00839 270 CDD homeodomain 79 136 IPR001356 GO:0003677
Pumo5g00839 270 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 48 204 IPR045224 GO:0003700
Pumo5g00839 270 MobiDBLite consensus disorder prediction 1 28 - -
Pumo5g00839 270 Coils Coil 127 175 - -
Pumo5g00839 270 PRINTS Lambda-repressor HTH signature 115 131 IPR000047 GO:0003677
Pumo5g00839 270 PRINTS Lambda-repressor HTH signature 106 115 IPR000047 GO:0003677
Pumo5g00839 270 Pfam Homeodomain 79 133 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00839 Pumo-Chr5 16400895 16403007 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g00839 1 262 Homeobox Transcription Factor Family AT3G01220 47.253 7.61e-77 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pumo5g00839 Homeodomain 2.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g00839 K09338 - gmx:100797920 495.352
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g00839 5 16400895 16403007 Pumo5g00839 5 16400895 16403007 ECH
Pumo2g02496 2 54541685 54542551 Pumo5g00839 5 16400895 16403007 PCT