Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00834 ATGGGAAGACCACCTTGTTGTGACAAAGAAGGGGTCAAGAAAGGGCCTTGGACTCCTGAAGAAGACATCATATTGGTGTCTTATATTCAGGAACATGGTCCTGGAAATTGGAGGGCAGTTCCTACCAAGACAGGGTTGTCAAGATGCAGTAAGAGTTGCAGACTTAGATGGACGAATTACCTGAGGCCAGGAATCAAACGTGGTAACTTCACAGAACAAGAGGAGAAGATGATAATCCATCTTCAAGATCTTTTAGGAAACAGATGGGCTGCAATAGCTTCATACCTTCCACAGAGAACAGATAATGACATAAAGAACTATTGGAACACCCATTTGAGGAAGAAGCTGAAGAAGATGCAAACAGGTTGTGAGGGTAGCTTGGGAGAAGGGTTTTCAGCCTCAAGGCAAATCCCTAGAGGCCAGTGGGAAAGAAGGCTCCAAACTGATATCCAAATGGCAAAGAGAGCTCTCAGTGAAGCTCTTTCACCAGATCAGAAGCCATCTTGTTTAACTGCATCAAACTCAAACCCTTCAGATAGTAGCAGCTCCTTCTCTTCCACCAAGCTAACACAATCTTTGTGCTATGCCTCAAGTGCTGACAACATAGCTCGCATGCTGAAGGGTTGGATGAAAAACCCACCAAAGTCCTCAAGAACTAACTCATCTGTGACTCAGAACTCCTTCAACAACTTGGCTGCAGCAGGTGCTGATACTGCTTCTAGTGGAGCAAAGGGATCACCACCAAGCAGTGCTGCTGAATTGTCTGAGAATTTTGAATCCTTGTTTGATTTTGATCAGTCTTTGGAGTCTCCAAACTCTGATCAATTCTCTCAGTCCTTGTCTCCTGAGGCCACTGTTTGGCAAGATGAAAGCAAGCCTCATATTGGTGTAGCAGAAATAATGCCCTTCTCTTTGCTTGAGAAATGGCTTCTTGATGAGGCTGGTTGCCAAGAGAAAGTTGGTTGTGGTGATGCCAAGTTTTTCTAA 987 0.4458 MGRPPCCDKEGVKKGPWTPEEDIILVSYIQEHGPGNWRAVPTKTGLSRCSKSCRLRWTNYLRPGIKRGNFTEQEEKMIIHLQDLLGNRWAAIASYLPQRTDNDIKNYWNTHLRKKLKKMQTGCEGSLGEGFSASRQIPRGQWERRLQTDIQMAKRALSEALSPDQKPSCLTASNSNPSDSSSSFSSTKLTQSLCYASSADNIARMLKGWMKNPPKSSRTNSSVTQNSFNNLAAAGADTASSGAKGSPPSSAAELSENFESLFDFDQSLESPNSDQFSQSLSPEATVWQDESKPHIGVAEIMPFSLLEKWLLDEAGCQEKVGCGDAKFF 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00834 328 FunFam MYB-related transcription factor 13 66 - -
Pumo5g00834 328 CDD SANT 69 112 IPR001005 -
Pumo5g00834 328 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pumo5g00834 328 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pumo5g00834 328 CDD SANT 16 61 IPR001005 -
Pumo5g00834 328 Gene3D - 68 126 - -
Pumo5g00834 328 Gene3D - 13 66 - -
Pumo5g00834 328 MobiDBLite consensus disorder prediction 158 185 - -
Pumo5g00834 328 SMART sant 66 114 IPR001005 -
Pumo5g00834 328 SMART sant 13 63 IPR001005 -
Pumo5g00834 328 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Pumo5g00834 328 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 237 - -
Pumo5g00834 328 MobiDBLite consensus disorder prediction 164 185 - -
Pumo5g00834 328 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Pumo5g00834 328 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Pumo5g00834 328 FunFam Transcription factor MYB30 68 126 - -
Pumo5g00834 328 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pumo5g00834 328 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00834 Pumo-Chr5 16271530 16273410 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g00834 1 325 MYB Transcription Factor Family AT5G62470 51.630 1.06e-104 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo5g00834 Myb_DNA-binding 6.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g00834 K09422 - gmx:780543 564.303
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo2g02484 2 54287106 54288673 Pumo5g00834 5 16271530 16273410 PCT