Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00833 ATGAGGCGAGTGATTTTGAGAAGAGAGGAGGAGCCTCCAGCATGCCCACCCAATTCAATGTTGAGAGTTGTGAGGCGCGTGAGATACCGCGAGTGCAGAAGGAACCATGCGTGCAGATATGGAGGTCATGCTGTGGATGGTTGCAGGGAGTTCATAGCAAGAGGTGAAGAAGGTGGTGCAGCTCTGGCTTGTGCAACATGTGGCTGCCATAGGAGCTTTCATAGGAGGGAGGAGCAAACTCAATTGGTTTGTACCTGCCCTGTTCATGCTCCTCCTAACAATGGAGCTTGA 291 0.5189 MRRVILRREEEPPACPPNSMLRVVRRVRYRECRRNHACRYGGHAVDGCREFIARGEEGGAALACATCGCHRSFHRREEQTQLVCTCPVHAPPNNGA 96
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00833 96 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 24 80 - -
Pumo5g00833 96 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 28 77 IPR006456 -
Pumo5g00833 96 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 29 77 IPR006456 -
Pumo5g00833 96 Pfam ZF-HD protein dimerisation region 27 78 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00833 Pumo-Chr5 16256400 16256690 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g00833 2 95 Zinc finger-homeobox gene family AT3G28917 56.122 1.03e-26 92.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Pumo5g00833 ZF-HD_dimer 1.8e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g00833 - - gra:105766244 107.457