Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00832 ATGGACATAACCCCAACAACAACGATCAACAACAACAACACTCCCAGTGCAACAACAACAACAACAAAATCCCCAGAACATGAAATCGAAACACCGACCAGGATCACCACCCCCGTCACTCCCACAGCGACAAAAACCTTATCTTTCTCGAACGGTGTCCTCAAACGCCACCACCATCACCACCACCCCCACCACCCTATCCCTGCGGTGGTTACCTACAAAGAATGCCTCAAAAACCACGCCGCCAACTTGGGTGGCCACGCCCTAGACGGTTGCGGCGAGTTCATGCCGTCGCCGACCGCCACCGCCGCCGACCCCAGCTCCATTAAATGCGCCGCCTGCGGCTGCCACCGGAACTTCCACCGCCGCGAGCCGGAGGAGCCCCCCATCGCCTCCACCACCACGCACGTCATCGAGTACCAGCCCCACCACCGCCACCACCCTCCGCCGCCGCTCCACGCGGCTGCGGTGGCCACTCGCAGCCCCAATTCCGCGTCCCCGCCGCCGATCTCCTCCTCTTACTACCCCTCCGCGCCGCACATGCTCCTCGCCCTCTCCGCCGGCCTCGCCGCGCCGCCGGAGAGCACCGCCGCACCCTCCGCCGCGCTCACCCGAAAGCGCTTCAGAACCAAGTTCAGCCAGGAGCAGAAGGAGAAGATGCAGAAGTTCGCTGAGAAAGTTGGGTGGAAGATGCAGAAACGCGACGATGATTTGATTCACGAGTTTTGCAACGAGGTTGGCGTCGATAGAAGCGTTCTCAAGGTTTGGATGCATAACAACAAAAACACCTTCGCCAAAAAAGATAATAATAATATTATTATTAGTAATGATAATAATATTACTAATAGTGATATTAATGATAATGATGCAAATGGTGGTGATGTTAAGGTTTTTGAAAACCCTAACAACAACAACGATGGTGTTAGTGGTGGTGAAGATCGTGCTGAGGATCCGATTCGTAATCACTATGATGGGGTGAACGTTGGTGCTAACGGGTCTTCTTCTAGTTCTTGA 1014 0.5483 MDITPTTTINNNNTPSATTTTTKSPEHEIETPTRITTPVTPTATKTLSFSNGVLKRHHHHHHPHHPIPAVVTYKECLKNHAANLGGHALDGCGEFMPSPTATAADPSSIKCAACGCHRNFHRREPEEPPIASTTTHVIEYQPHHRHHPPPPLHAAAVATRSPNSASPPPISSSYYPSAPHMLLALSAGLAAPPESTAAPSAALTRKRFRTKFSQEQKEKMQKFAEKVGWKMQKRDDDLIHEFCNEVGVDRSVLKVWMHNNKNTFAKKDNNNIIISNDNNITNSDINDNDANGGDVKVFENPNNNNDGVSGGEDRAEDPIRNHYDGVNVGANGSSSSS 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00832 337 FunFam Zinc-finger homeodomain protein 2 193 266 - -
Pumo5g00832 337 SUPERFAMILY Homeodomain-like 199 266 IPR009057 -
Pumo5g00832 337 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 51 263 - -
Pumo5g00832 337 MobiDBLite consensus disorder prediction 141 170 - -
Pumo5g00832 337 NCBIfam homeobox domain, ZF-HD class 205 262 IPR006455 -
Pumo5g00832 337 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 73 124 IPR006456 -
Pumo5g00832 337 MobiDBLite consensus disorder prediction 1 44 - -
Pumo5g00832 337 Pfam ZF-HD protein dimerisation region 71 125 IPR006456 -
Pumo5g00832 337 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 72 124 IPR006456 -
Pumo5g00832 337 Gene3D - 192 266 - -
Pumo5g00832 337 MobiDBLite consensus disorder prediction 278 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00832 Pumo-Chr5 16208575 16210281 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g00832 1 261 ZF-HD Transcription Factor Family AT5G15210 52.874 1.23e-79 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Pumo5g00832 ZF-HD_dimer 2.2e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g00832 - - gmx:100789447 459.529
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g00832 5 16208575 16210281 Pumo5g00832 5 16208575 16210281 ECH
Pumo2g02482 2 54220807 54222108 Pumo5g00832 5 16208575 16210281 PCT