Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00830 ATGGAGGGGACCAGCCAAAGCACGTTTACCTTTATCCCTAGCACGATTGAGCCACCAAGTCCAAGCATCCCTGAGACACCATCATCCCCTCGTTCTCTTGCAAGAATTGCACAAGCTTACCCTCCTGGCTTTCCCAGAAAGGTATTTGCAGAGGTTATAGGGACATTTCTATTGGTGTTTGTGGGGAGTGGTTCAGCTGGACTTAGTAAGATTGATGAAAGCAAGGTGTCAAAGCTTGGAGCTTCACTTGCAGGAGGACTCATAGTGACGGTGATGATTTACTCAATTGGACACATCTCAGGGGCACACATGAACCCAGCTGTTTCCCTTGCTTTTACCGCAGTGAGGCATCTTCCATGGCCACAGCTCCCATTTTATGTAGCAGCTCAACTCACTGGAGCCATTTCTGCTTCATACACATTGCGTGAACTGTTACAACCATCAAATGAGATTGGGGGAACATCACCTGCTGGATCACATATTCAAGCCCTAATCATGGAAATGGTGACCACATACACCATGGTGTTCATTTCCATGGCCGTAGCCACTGACACAAACGCGACAGGACAGTTATCAGGAGTAGCAGTAGGTTCTTCTGTTTGCATAGCAAGCATTGTAGCCGGACCAATATCAGGGGGATCAATGAACCCAGCAAGGACATTAGGTCCTGCAATTGCAACTTCATACTACAAGGGACTTTGGTTATATTTTGTTGGACCAATTACTGGGGCAGTTTTAGCAGCATGGTCTTACAATGTGATTAGGGACACTGAACACCCTGGTTTTCCATTTTCACTATCCTCCCTCTCATTCAAGGTGCGCCAAAGCATTAGTGGCAGTGGCAAAACCGACCAACGATGCTTGGTGTGA 870 0.4713 MEGTSQSTFTFIPSTIEPPSPSIPETPSSPRSLARIAQAYPPGFPRKVFAEVIGTFLLVFVGSGSAGLSKIDESKVSKLGASLAGGLIVTVMIYSIGHISGAHMNPAVSLAFTAVRHLPWPQLPFYVAAQLTGAISASYTLRELLQPSNEIGGTSPAGSHIQALIMEMVTTYTMVFISMAVATDTNATGQLSGVAVGSSVCIASIVAGPISGGSMNPARTLGPAIATSYYKGLWLYFVGPITGAVLAAWSYNVIRDTEHPGFPFSLSSLSFKVRQSISGSGKTDQRCLV 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00830 289 PANTHER AQUAPORIN NIP2-1 38 259 IPR034294 -
Pumo5g00830 289 Pfam Major intrinsic protein 44 251 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pumo5g00830 289 SUPERFAMILY Aquaporin-like 40 260 IPR023271 -
Pumo5g00830 289 PRINTS Major intrinsic protein family signature 85 109 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pumo5g00830 289 PRINTS Major intrinsic protein family signature 122 141 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pumo5g00830 289 PRINTS Major intrinsic protein family signature 166 184 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pumo5g00830 289 PRINTS Major intrinsic protein family signature 46 65 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pumo5g00830 289 PRINTS Major intrinsic protein family signature 234 254 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pumo5g00830 289 PRINTS Major intrinsic protein family signature 197 219 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pumo5g00830 289 MobiDBLite consensus disorder prediction 1 16 - -
Pumo5g00830 289 ProSitePatterns MIP family signature. 103 111 IPR022357 -
Pumo5g00830 289 Gene3D Glycerol uptake facilitator protein. 24 260 IPR023271 -
Pumo5g00830 289 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00830 Pumo-Chr5 16129845 16135071 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g00830 46 260 Major Intrinsic Protein MIP AT5G37820 46.296 1.62e-64 203
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g00830 K09874 - gmx:100795261 479.559