Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00812 ATGTCGGAGGCAAAAGACCCGGCGATCAAGCTCTTCGGGAAGACGATCCCCGTGCCGGAGATTCCGCCGGCGTCGTCTTCCGGTGATGTTGTTGACGACAGTGTCGACGCTTCTTCCACCAACTCTTCAAGGGAGTCTCATACCAACAGAGATGCACAAGAGAAAGATTTTGATAAGGACACATTGGGAGAAAAATCAACTGATGATAAAAAAGAAGATGCAGCCCCCACCCAGTCATCGGAAGAGGTCACCAATCCAGATACTGCATCTAGAACGTGTGAAGAATCTGTTACCCTGTCCACTGAGAGGGAGACTACTACATTGAAAAGCTCAAAGACTGAAGAAGAACAGGGAGAGACAAGTAATTCACAGGATAAGAACCTCAAAAAACCAGACAAAATACTGCCTTGTCCTCGCTGTAATAGCATGGACACCAAGTTCTGCTACTACAATAATTACAATGTCAACCAACCCCGCCACTTCTGCAAGAATTGCCAGAGATACTGGACTTCTGGGGGGACCATGAGGAACGTTCCTGTAGGTGCTGGTCGCAGGAAGAACAAGAGTTCAGCTTCTCACTATCGCCAGATAACTGTTTCTGAGGCAGCACTCCAGAATCCTCGAACGGACTTGCCAAATGGAGCATATCATCCTTCCTTGAAGTGCAATGGTACAGTCCTTACATTTGGAACTGATACACCCTTGTGTGAATCAATGGCATCTGTTTTGAACCTTGCTGATAAAACCGTGCACAATTACACAAGAAATGGATTTCATAAACCTGAAGAACTAAGAATTCCTGTTCCTCATGCCAGTGGAGAAAAAGGGGATGATCAATCCAATAAATCTTCGGTTACCTCCACAAAGTCAGTGGAAGGTGCAAGCACCAATGGACCCCAAGAACAAGCTATGCAGAATTGTCAGACCTTCCCACCACAGGTTCCCTACTTTCCTGGGACCCCTTGGCCTATCCCATGGAATCCAGTGCAGTGGAGTTCTCCGGTACCACCGCCTGCTTTTTGTCCACCCGGATTTACCATGCCATTCTATCCTGCAACAGCTTATTGGGGTTGTGCTGTGCCAGGCACGTGGAACATCCCATGGCTAGTGCAACCACCATCACCAAATGGGGCAGCACCTAACTCTGGCCCCAACTCCCCAACCTTGGGTAAACATTCAAGAGAAGACAACACATTCAAACCAAATGAGTCAGGTGGTGAGGATGGACACAGCAAAGAAAACAACAAAGAAAGGAGCCTGTGGATTCCAAAAACTTTGAGGATTGATGAATCAGGAGAAGCGGCAAAAAGCTCTATATGGGCAACACTGGGGATTAAAAATGACAAGGCTGACTCAGTTCCTGGGGGAACACTCTTTAAAGCCTTCCCTTCAAAGCATGATGATAAAAACCATTCAATGCAAGCCTCACCGGTCTTGCAGGCCAATCCAGCGGCATTGTCTAGGTCACTTAACTTTCATGAGACCTCATAA 1491 0.4715 MSEAKDPAIKLFGKTIPVPEIPPASSSGDVVDDSVDASSTNSSRESHTNRDAQEKDFDKDTLGEKSTDDKKEDAAPTQSSEEVTNPDTASRTCEESVTLSTERETTTLKSSKTEEEQGETSNSQDKNLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTSGGTMRNVPVGAGRRKNKSSASHYRQITVSEAALQNPRTDLPNGAYHPSLKCNGTVLTFGTDTPLCESMASVLNLADKTVHNYTRNGFHKPEELRIPVPHASGEKGDDQSNKSSVTSTKSVEGASTNGPQEQAMQNCQTFPPQVPYFPGTPWPIPWNPVQWSSPVPPPAFCPPGFTMPFYPATAYWGCAVPGTWNIPWLVQPPSPNGAAPNSGPNSPTLGKHSREDNTFKPNESGGEDGHSKENNKERSLWIPKTLRIDESGEAAKSSIWATLGIKNDKADSVPGGTLFKAFPSKHDDKNHSMQASPVLQANPAALSRSLNFHETS 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00812 496 MobiDBLite consensus disorder prediction 31 46 - -
Pumo5g00812 496 MobiDBLite consensus disorder prediction 1 133 - -
Pumo5g00812 496 MobiDBLite consensus disorder prediction 47 77 - -
Pumo5g00812 496 MobiDBLite consensus disorder prediction 452 496 - -
Pumo5g00812 496 MobiDBLite consensus disorder prediction 393 418 - -
Pumo5g00812 496 MobiDBLite consensus disorder prediction 261 277 - -
Pumo5g00812 496 ProSitePatterns Zinc finger Dof-type signature. 137 173 IPR003851 GO:0003677|GO:0006355
Pumo5g00812 496 MobiDBLite consensus disorder prediction 375 418 - -
Pumo5g00812 496 Pfam Dof domain, zinc finger 132 189 IPR003851 GO:0003677|GO:0006355
Pumo5g00812 496 MobiDBLite consensus disorder prediction 107 133 - -
Pumo5g00812 496 MobiDBLite consensus disorder prediction 278 303 - -
Pumo5g00812 496 MobiDBLite consensus disorder prediction 78 106 - -
Pumo5g00812 496 ProSiteProfiles Zinc finger Dof-type profile. 135 189 IPR003851 GO:0003677|GO:0006355
Pumo5g00812 496 PANTHER CYCLIC DOF FACTOR 2 1 496 IPR045174 GO:0003700|GO:0006355
Pumo5g00812 496 MobiDBLite consensus disorder prediction 473 496 - -
Pumo5g00812 496 MobiDBLite consensus disorder prediction 261 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00812 Pumo-Chr5 15879889 15883769 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g00812 6 496 C2C2-Dof Transcription Factor Family AT5G39660 46.154 5.10e-121 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pumo5g00812 zf-Dof 2.8e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g00812 - - gmx:100784308 905.59