Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00806 ATGTCAACCTCGAGCCAGCACCAGTTCCGATACACTCAAACCCCATCCAAGGTCCTGCACCTTCGGAACCTTCCCTGGGAATGCTCAGAGGAAGAGCTCAAAGAGCTCTGCAAACCCTTCGGTAAGATCGTCAACACCAAGTGCAATGTCGGCGCCAATCGCAACCAGGCTTTTGTCGAATTCGCGGATCTAAATCAAGCCATTTCGATGGTATCATATTATGCTTCATCTTCGGAACCAGCTATGGTTCGTGGTAAAACTGTTTACATTCAGTATTCTAATAGACATGAAATTGTCAACAACAAAAGCCCTGGAGATATTCCTGGAAATGTCTTGCTGGTAACTATTGAAGGTGTGGAAGCTGGGGATGTGAGCATTGATGTTATCCATTTGGTGTTTTCTGCTTTTGGCTTTGTTCACAAAATCGCGACATTCGAAAAGACTGCAGGTTTTCAGGCTCTGATTCAGTTCACCGATGCTGAGACTGCTTCTTCAGCTAGGGATGCACTGGATGGAAGAAGTATACCAAGATACCTGCTTCCAGCCCATGTTGGTTCTTGTAACTTGCGTATTTCATATTCAGCACATAAAGATTTGAATATCAAATTTCAGTCAAATCGTAGCAGGGACTACACAAATCCTATGCTTCCTGTTAATTATACTGCTATTGAGGGGGCAGTACAGACTGCTGTAGGCCCTGATGGGAAGAAGAAAGAACCTGAGAGCAATGTGCTTTTGGCTTCCATTGAAAATATGCAGTATGCTGTTACTGTTGATGTCCTCCACACGGTGTTCTCTGCATTTGGTACTGTCCAGAAAATTGCTATATTCGAAAAGAACGGTCAAACTCAGGCACTGATTCAATACCCTGATATCGTAACGGCATCAGCTGCTAGAGAAGCTCTAGAGGGGCATTGCATATATGATGGTGGCTATTGTAAGCTTCATCTATCATACTCTCGTCATACTGATCTCAATGTAAAGGCTTTCAGTGACAAAAGTAGAGACTATACAGTGCCAGATCCTAGTCTCCTTGCAGCACAAGGTCCTGCAACGCCTTGGCAAAATCCTCAGGCTGCACCTATGTACCCTGGTAGTGCCCCTGCTTATCATACTCAAGTTCCCGGCGGACAAGTGCCGTGGGATCCAACCATGCAGGCAGTTAGACCGAGTTATGTATCGGCACCCGGTACTTTTCCTGTTCAAACTGGTGCAGCTCCACCGATGCCAGCCTATGCGCCAGCAGCGGCTATGCCTGCCGCTTCCTCACCTCTTGCACAAAGCAGCCCCATTGCTCACAGTGCTAATCCAATGGGAATCACGCAGCCTGGGGTTCCACCCAATGTAAATTTACAGCCCAGTGGTGCTTCACTTTCAGTTCCTGGTTCCTCACCTCTCATGCAAACCAGCCAAGCTGCTCAAGGATTGGTTCAGCCTGGGGTTCAGCCAAATGCAAGACCTGGTGGTGCTTCACCTCCAGGTCAACATTATTATGGCTAG 1500 0.4707 MSTSSQHQFRYTQTPSKVLHLRNLPWECSEEELKELCKPFGKIVNTKCNVGANRNQAFVEFADLNQAISMVSYYASSSEPAMVRGKTVYIQYSNRHEIVNNKSPGDIPGNVLLVTIEGVEAGDVSIDVIHLVFSAFGFVHKIATFEKTAGFQALIQFTDAETASSARDALDGRSIPRYLLPAHVGSCNLRISYSAHKDLNIKFQSNRSRDYTNPMLPVNYTAIEGAVQTAVGPDGKKKEPESNVLLASIENMQYAVTVDVLHTVFSAFGTVQKIAIFEKNGQTQALIQYPDIVTASAAREALEGHCIYDGGYCKLHLSYSRHTDLNVKAFSDKSRDYTVPDPSLLAAQGPATPWQNPQAAPMYPGSAPAYHTQVPGGQVPWDPTMQAVRPSYVSAPGTFPVQTGAAPPMPAYAPAAAMPAASSPLAQSSPIAHSANPMGITQPGVPPNVNLQPSGASLSVPGSSPLMQTSQAAQGLVQPGVQPNARPGGASPPGQHYYG 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00806 499 SUPERFAMILY RNA-binding domain, RBD 248 342 IPR035979 GO:0003676
Pumo5g00806 499 CDD RRM2_PTBPH1_PTBPH2 109 203 IPR034793 -
Pumo5g00806 499 Pfam RRM-like domain 242 320 IPR021790 -
Pumo5g00806 499 PANTHER MATRIN 3/NUCLEAR PROTEIN 220-RELATED 4 259 - -
Pumo5g00806 499 SMART rrm1_1 18 91 IPR000504 GO:0003723
Pumo5g00806 499 SMART rrm1_1 246 316 IPR000504 GO:0003723
Pumo5g00806 499 SMART rrm1_1 113 185 IPR000504 GO:0003723
Pumo5g00806 499 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 242 322 IPR000504 GO:0003723
Pumo5g00806 499 CDD RRM3_PTBPH1_PTBPH2 242 338 IPR034794 -
Pumo5g00806 499 Gene3D - 2 107 IPR012677 -
Pumo5g00806 499 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 17 95 IPR000504 GO:0003723
Pumo5g00806 499 MobiDBLite consensus disorder prediction 426 478 - -
Pumo5g00806 499 Gene3D - 241 344 IPR012677 -
Pumo5g00806 499 Gene3D - 109 220 IPR012677 -
Pumo5g00806 499 FunFam Polypyrimidine tract-binding protein-like 2 241 346 - -
Pumo5g00806 499 SUPERFAMILY RNA-binding domain, RBD 112 209 IPR035979 GO:0003676
Pumo5g00806 499 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 21 70 IPR000504 GO:0003723
Pumo5g00806 499 SUPERFAMILY RNA-binding domain, RBD 4 106 IPR035979 GO:0003676
Pumo5g00806 499 CDD RRM1_PTBPH1_PTBPH2 15 95 IPR034792 -
Pumo5g00806 499 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 109 175 - -
Pumo5g00806 499 MobiDBLite consensus disorder prediction 426 499 - -
Pumo5g00806 499 FunFam Polypyrimidine tract-binding protein-like 2 110 220 - -
Pumo5g00806 499 FunFam Polypyrimidine tract-binding protein homolog 2 4 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00806 Pumo-Chr5 15827137 15833204 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g00806 10 206 Eukaryotic Initiation Factors Gene Family AT3G16380 24.528 6.78e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g00806 K14948 - gmx:100792308 902.508