Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00803 ATGGGATCAATGGAGAACGTTTCCAAACCAAGGAAGGAAAATCAGCAGTTTGAATTGCCAGCTGGTTTTAGATTTCATCCAACGGATGAAGAACTCATAAATCACTACCTCACAAAGAAGGTTGTTGACAACTGTTTCTGTGCTTTGGCCATTGGTGAGGTTGATTTGAACAAGTGTGAGCCATGGGATTTGCCTGGGTTGGCTAAAATGGGTGAAAGTGAGTGGTATTATTTCTGTGTGAGGGACAGAAAATACCCAACTGGTCTAAGGACTAATAGGGCCACTGATGCTGGTTATTGGAAGGCCACAGGCAAAGACAAGGAGATAATAATGGAGAATGCACTCATTGGGATGAAGAAAACTTTGGTTTTCTACAAGGGAAGAGCTCCAAAAGGTGAAAAGACAAACTGGATTATGCATGAATATAGGTTGGAAGGGAAACATAATCAACCCAAACCTGGAAAGAGTGAATGGGTGATTTGTAGAGTCTTTGAGAAGAGCCCTTGTGGAAAGAAAATGCATGTTCCAAAGTGTGGGAGGTTCAACAACTCCTTTGGAGAGGAACCATCACCAACTGCTTCTCTATTGCCTCCTTTGATGGATTCTTCTCCATACAACAGTGAAACAAGGACCACTGCTGGTGAGTTGTCTCAGGTGACTTGCTTCTCTGATCCAAATCGAACTGAGGATCAGAACACACATGATGACATTGTTGATAGCATGGAAACTCCTATTTTGAACTTTTCACCCTCTTCAAGACCTGATGATGTTTCAACTTTGGCCAAAGCAACCCTTTCAGCCTCAAACCAATCAACACAGATTGCACACCAAATTGGGAACTCACAGTACCCAGATTATTGTTATGTGCCTCAAGAACAGTCCATGTTGAGGATGCTGATGGAAAACCAAGGACCAAGTGCAAAGCAAATTCAGAAAGCAGAGTTTTCCGAGGGAAGAGACTTTGATGCTGATATCTCATCTGTGATATACAACAATGACATGATACACAGAATGTTTGGGAATCAAGAACATTCTTCAGCTTCTGCAGGGCCTGTGGACACTGATTGCCTATGGAATTACTAA 1083 0.4238 MGSMENVSKPRKENQQFELPAGFRFHPTDEELINHYLTKKVVDNCFCALAIGEVDLNKCEPWDLPGLAKMGESEWYYFCVRDRKYPTGLRTNRATDAGYWKATGKDKEIIMENALIGMKKTLVFYKGRAPKGEKTNWIMHEYRLEGKHNQPKPGKSEWVICRVFEKSPCGKKMHVPKCGRFNNSFGEEPSPTASLLPPLMDSSPYNSETRTTAGELSQVTCFSDPNRTEDQNTHDDIVDSMETPILNFSPSSRPDDVSTLAKATLSASNQSTQIAHQIGNSQYPDYCYVPQEQSMLRMLMENQGPSAKQIQKAEFSEGRDFDADISSVIYNNDMIHRMFGNQEHSSASAGPVDTDCLWNY 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00803 360 ProSiteProfiles NAC domain profile. 19 166 IPR003441 GO:0003677|GO:0006355
Pumo5g00803 360 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 18 266 - -
Pumo5g00803 360 SUPERFAMILY NAC domain 16 166 IPR036093 GO:0003677|GO:0006355
Pumo5g00803 360 Gene3D NAC domain 28 169 IPR036093 GO:0003677|GO:0006355
Pumo5g00803 360 Pfam No apical meristem (NAM) protein 20 144 IPR003441 GO:0003677|GO:0006355
Pumo5g00803 360 FunFam NAC domain-containing protein 100-like 28 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00803 Pumo-Chr5 15785212 15787163 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g00803 18 360 NAC Transcription Factor Family AT5G07680 51.873 4.51e-105 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pumo5g00803 NAM 2.1e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g00803 - - gmx:100782172 681.789