Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00802 ATGGGAAGATCACCATGCTGTGACAAGGTGGGTTTAAAGAAAGGACCATGGACACCAGAGGAAGATCAGAAGCTCTTGGCGTATATTGAAGAACATGGCCATGGAAGCTGGCGTGCTTTGCCAGCCAAAGCTGGACTTCAGAGGTGTGGCAAGAGCTGCAGATTGAGATGGACTAATTATCTAAGGCCTGATATTAAGAGGGGAAAGTTCAGTATGCAAGAAGAGCAAACCATCATTCAACTCCATGCACTCTTAGGGAACAGGTGGTCTGCAATAGCCACACATTTGCCAAAGAGAACAGATAATGAGATCAAGAACTACTGGAACACTCATCTTAAGAAAAGGTTAGACAAAATGGGCATTGACCCTGTGACCCACAAGCCCAAGAACGATGCCCTTGTCTCCACTGAGGGCCATTCCAAGAGTGCTGCCAACCTCAGCCACATGGCTCAGTGGGAAAGTGCCAGACTCGAAGCAGAAGCAAGATTGGTCCGAGAATCAAAACTACGTAGTAGTTCACACTCATCATTATTGCAGCACTCCCTAATTGGCACTTCTGCATCATCATCATCATCTTCAGCTCCAATTATACCACCATCATCACTTTCTCTTGATCATGCTTGGAACAATGGGAGTAGTACTAGCACTGGTAATGCAACTAGGGTCAGTGACCTTGAGTCCCCCACGTCTACCTTATCTGAGAACAACGCGCCACCAATTATGACTAGTACTGTGATTGAGTTTGTGGGTTCTTCAGAGAGAGGGATGGTGAAGGAAGAAGGAGAGCAAGAGTGGAACAAGTTAGGTTTTCATGAAAGCTCCACCCATTTGGGAGAATACAAAGATGGCATGGAGAATTCAATGCCTTTCACGTCTAGTTTGCATGAGTTGACAATGACCATGGCTACCACGTGGGGTTCTAGCACTAGTAGTGCACATGCACATGCTGCTGAGGAGGGTTTCACCAATCTTTTGCTGAATACTAATGCCGGTGACCGGAGTTTGTCGCCGGAAGACGGAGGAGAGTCTAATAATTGTCATGATAATGCTGGTAGCAGTGGCAGTGGTGGTAGCAACGGTGATTTATATGAAGATAACAAGAACTATTGGAACAACATTCTTAATTTGATGAATTATTCTTCCCCTTCGGATTCACCCATGTTCTGA 1167 0.4567 MGRSPCCDKVGLKKGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLQRCGKSCRLRWTNYLRPDIKRGKFSMQEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKKRLDKMGIDPVTHKPKNDALVSTEGHSKSAANLSHMAQWESARLEAEARLVRESKLRSSSHSSLLQHSLIGTSASSSSSSAPIIPPSSLSLDHAWNNGSSTSTGNATRVSDLESPTSTLSENNAPPIMTSTVIEFVGSSERGMVKEEGEQEWNKLGFHESSTHLGEYKDGMENSMPFTSSLHELTMTMATTWGSSTSSAHAHAAEEGFTNLLLNTNAGDRSLSPEDGGESNNCHDNAGSSGSGGSNGDLYEDNKNYWNNILNLMNYSSPSDSPMF 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00802 388 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Pumo5g00802 388 Gene3D - 68 141 - -
Pumo5g00802 388 CDD SANT 69 112 IPR001005 -
Pumo5g00802 388 CDD SANT 16 61 IPR001005 -
Pumo5g00802 388 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Pumo5g00802 388 FunFam MYB-related transcription factor 13 66 - -
Pumo5g00802 388 MobiDBLite consensus disorder prediction 121 140 - -
Pumo5g00802 388 FunFam Transcription factor MYB39 68 136 - -
Pumo5g00802 388 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Pumo5g00802 388 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pumo5g00802 388 MobiDBLite consensus disorder prediction 207 237 - -
Pumo5g00802 388 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 235 - -
Pumo5g00802 388 Gene3D - 13 66 - -
Pumo5g00802 388 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pumo5g00802 388 SMART sant 66 114 IPR001005 -
Pumo5g00802 388 SMART sant 13 63 IPR001005 -
Pumo5g00802 388 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pumo5g00802 388 MobiDBLite consensus disorder prediction 328 360 - -
Pumo5g00802 388 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00802 Pumo-Chr5 15768521 15771382 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g00802 319 388 MYB Transcription Factor Family AT3G01140 47.222 3.76e-06 46.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo5g00802 Myb_DNA-binding 1.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g00802 K09422 - gmx:100794047 665.611