Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00799 ATGGAAGGACCATCAGGTGTGAGGAAAGGCGCATGGAGTAAATGTGAAGACGACCTTCTCAGAGATTGCGTGCAACTTTATGGGGAAGGAAAATGGCACCTTGTTCCTCAAAGAGCAGGGCTGAATAGATGCCGCAAGAGTTGTAGATTGAGATGGTTGAACTATCTAAAACCAAATATCAAGAGGGGAGATTTCAGTGAAGATGAGGTTGATATGATGATCAGAATGCATAAGCTTTTGGGGAACAGATGGTCCCTGATTGCAGGAAGGCTTCCGGGAAGAACTTCAAACGATGTGAAGAATTACTGGAACACCTACATGCGCCGTAAAGTATATTCTCAGAAGAAAGAAGACAACAAGGTAAAGCTGCAGCAGCAAGAGCCCAAATCAACATCAACAACAGTGAAACCTCACCAAGTGATAAAGCCTGTTCCTCGAGCCTTAACAAAACCATTAATGTCCCCATGGTTGCAAGGGAAATTGTTTAATGGTTCCAAAGTTGTTAATGTTAGTGAAGCAGCAGGTGCAGCAGCTTCATCTGGGTCCGGGAATTGGTGGGAAACTTTGTTAGATGACAATGGAGGTAACAACAACACGTGCTTCTTTGGTGGGGTAGATGGAACATTTGACCTTTGGGATGAACAGTTTAATCCAATAGCTTGTGATGACTTTCTTACACAAGGTGAAAACTGGAGCGATTTTCTTCTTGACCTAGGAGATTAG 723 0.4343 MEGPSGVRKGAWSKCEDDLLRDCVQLYGEGKWHLVPQRAGLNRCRKSCRLRWLNYLKPNIKRGDFSEDEVDMMIRMHKLLGNRWSLIAGRLPGRTSNDVKNYWNTYMRRKVYSQKKEDNKVKLQQQEPKSTSTTVKPHQVIKPVPRALTKPLMSPWLQGKLFNGSKVVNVSEAAGAAASSGSGNWWETLLDDNGGNNNTCFFGGVDGTFDLWDEQFNPIACDDFLTQGENWSDFLLDLGD 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00799 240 ProSiteProfiles Myb-like domain profile. 57 107 IPR001005 -
Pumo5g00799 240 FunFam Transcription factor MYB113 64 140 - -
Pumo5g00799 240 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 57 111 IPR017930 -
Pumo5g00799 240 Gene3D - 64 138 - -
Pumo5g00799 240 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 5 134 - -
Pumo5g00799 240 CDD SANT 11 56 IPR001005 -
Pumo5g00799 240 Gene3D - 9 61 - -
Pumo5g00799 240 ProSiteProfiles Myb-like domain profile. 4 56 IPR001005 -
Pumo5g00799 240 FunFam Myb transcription factor 9 61 - -
Pumo5g00799 240 MobiDBLite consensus disorder prediction 115 138 - -
Pumo5g00799 240 CDD SANT 65 107 IPR001005 -
Pumo5g00799 240 Pfam Myb-like DNA-binding domain 62 106 IPR001005 -
Pumo5g00799 240 Pfam Myb-like DNA-binding domain 9 56 IPR001005 -
Pumo5g00799 240 SUPERFAMILY Homeodomain-like 6 103 IPR009057 -
Pumo5g00799 240 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 7 56 IPR017930 -
Pumo5g00799 240 SMART sant 61 109 IPR001005 -
Pumo5g00799 240 SMART sant 8 58 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00799 Pumo-Chr5 15721540 15723159 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g00799 2 149 MYB Transcription Factor Family AT1G66370 59.603 4.40e-58 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo5g00799 Myb_DNA-binding 3.7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g00799 - K16166 gmx:100781091 381.719