Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00797 ATGGAAGGATCATCAGGTGTGAGGAAAGGCACATGGAGTAACTTAGAAGATGACCTTCTCAAAGCTTGCGTGCAACTTTATGGAGAAGGAAAATGGCACCTTGTTCCTCAAAGGGCAGGGTTGAACAGATGCCGCAAGAGTTGTAGATTGAGATGGTTGAACTATCTCAAACCAAATATCAAGCGGGGAGATTTCAGTGAAGATGAGATGGTCCCTGATTGCAGGAAGACTTCCGGGAAGAACTTCAAATGA 252 0.4484 MEGSSGVRKGTWSNLEDDLLKACVQLYGEGKWHLVPQRAGLNRCRKSCRLRWLNYLKPNIKRGDFSEDEMVPDCRKTSGKNFK 83
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00797 83 Gene3D - 9 61 - -
Pumo5g00797 83 SUPERFAMILY Homeodomain-like 10 69 IPR009057 -
Pumo5g00797 83 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 4 69 - -
Pumo5g00797 83 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 4 60 IPR017930 -
Pumo5g00797 83 Pfam Myb-like DNA-binding domain 9 56 IPR001005 -
Pumo5g00797 83 FunFam Myb transcription factor 9 61 - -
Pumo5g00797 83 ProSiteProfiles Myb-like domain profile. 4 56 IPR001005 -
Pumo5g00797 83 SMART sant 8 58 IPR001005 -
Pumo5g00797 83 CDD SANT 11 56 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00797 Pumo-Chr5 15628513 15629074 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g00797 1 70 MYB Transcription Factor Family AT1G56650 73.239 6.19e-32 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pumo5g00797 Myb_DNA-binding 2.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g00797 - K09422 gmx:100780023 145.591