Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00788 ATGGCAAGGAAGAGAAAGGTTGCCGAAGCAATTGAAGAGAGGAATCCATCTGAGGCAACCATGGCATGGGATGAGGTGATGAAGGAAGCTGCAGCACTAGGAAGTGCCAGGAGAATGAGGAAGAGATTTGTTGGGGTGAGACAAAGGCCATCAGGAAGATGGGTAGCTGAGATAAAAGATACCATTCAGAAGATAAGAGTGTGGTTAGGAACCTTTGATACAGCTGAGGAAGCTGCAAGAGCCTATGATGAGGCTGCTTGCCTTCTTCGCGGCACCAACACTAGAACAAACTTCTGGCCTAGTTCTCAATCTTCCTCAACTCCTGCTCTTCCCTCAAAGATTACCAATCTCCTCCTTCAAAGGCTTAAAGCAAGGAATAACAATAACAATACCAATAGCAACCCTTGTTCTCTTTCTTCTTCTTCCTCCTCCAGTTCTCTTTTCACCAACCACCAACAAAAGCAACAAGAAGATGCATGTGGAATTGAGTCAACATCTTTCTCAATGGACCAATTCACAGATTTCCTTAATGACCCTGAAGATTATAGCACAAGCAACAAGGAGTTTAGCAATGATAGTGCACAAATTGATTACATCACAAGCAGTCTTGAATCATGTTTGAATGAAAATGATGATTGCAGGGAAAAAGAAAAAGAAATGGAAATGGAATTTGACTTCAGCAGTGTGACACAAACATCAAGTGCTGATATAAATTCCGGAGGGGAAAGAGAGGAAGACAGTGAAGATGGCACTGATTTGAGTGCTCAGGATTTTCAGTTTCTTGACAATGTTGTTCCATCCGGTTACTATTATTCACCTTTTGAGATTGCTGAAGAGATTGAGGAGCAATTGGAGCCAGAGAACTGTGGTGATGAGCCTTCAATGCTAAGAGCAGTCATGAAGAGAATGAAATATGAGAGGAAGTTTTCAGCTTCCCTTTATGCCTTCAATGGAATACCTGAGTGCTTGAAGTTGAAACTTGAATCAGGAAACAGAAATGGAAGAGGGGTTTCTATTTCTAATCAACTAACCAACCTCAAGATGGCTTGTAGCAAAAACAAAATTGAGGCTAATAAGAAGAATGAAGAATACATGGAAGCAATGGATAGGAAAGAGGAAGAAACCCCACAAACATCAATTGGCATGGATTGCTCTTCCCCTTCTTTCTCATCCAGTGTTGATGATGGAGAACTGTTACTTTGGAATTCACTTGATCTTCCTACTATTTGCTTTGTTAACTAG 1242 0.4122 MARKRKVAEAIEERNPSEATMAWDEVMKEAAALGSARRMRKRFVGVRQRPSGRWVAEIKDTIQKIRVWLGTFDTAEEAARAYDEAACLLRGTNTRTNFWPSSQSSSTPALPSKITNLLLQRLKARNNNNNTNSNPCSLSSSSSSSSLFTNHQQKQQEDACGIESTSFSMDQFTDFLNDPEDYSTSNKEFSNDSAQIDYITSSLESCLNENDDCREKEKEMEMEFDFSSVTQTSSADINSGGEREEDSEDGTDLSAQDFQFLDNVVPSGYYYSPFEIAEEIEEQLEPENCGDEPSMLRAVMKRMKYERKFSASLYAFNGIPECLKLKLESGNRNGRGVSISNQLTNLKMACSKNKIEANKKNEEYMEAMDRKEEETPQTSIGMDCSSPSFSSSVDDGELLLWNSLDLPTICFVN 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00788 413 FunFam ethylene-responsive transcription factor RAP2-11 41 100 - -
Pumo5g00788 413 CDD AP2 41 98 IPR001471 GO:0003700|GO:0006355
Pumo5g00788 413 Coils Coil 354 374 - -
Pumo5g00788 413 Gene3D AP2/ERF domain 41 99 IPR036955 GO:0003700|GO:0006355
Pumo5g00788 413 MobiDBLite consensus disorder prediction 126 160 - -
Pumo5g00788 413 Coils Coil 203 223 - -
Pumo5g00788 413 SMART rav1_2 42 105 IPR001471 GO:0003700|GO:0006355
Pumo5g00788 413 PRINTS Ethylene responsive element binding protein signature 43 54 IPR001471 GO:0003700|GO:0006355
Pumo5g00788 413 PRINTS Ethylene responsive element binding protein signature 65 81 IPR001471 GO:0003700|GO:0006355
Pumo5g00788 413 ProSiteProfiles AP2/ERF domain profile. 42 99 IPR001471 GO:0003700|GO:0006355
Pumo5g00788 413 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 23 310 - -
Pumo5g00788 413 Pfam AP2 domain 42 91 IPR001471 GO:0003700|GO:0006355
Pumo5g00788 413 MobiDBLite consensus disorder prediction 223 251 - -
Pumo5g00788 413 SUPERFAMILY DNA-binding domain 42 100 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00788 Pumo-Chr5 15583103 15584598 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g00788 40 118 AP2-EREBP Transcription Factor Family AT5G19790 72.152 5.08e-32 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Pumo5g00788 AP2 9.5e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g00788 K09286 - gmx:100796159 661.373