Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00787 ATGGATCTAGAAATGGATGGACCGGCTGGCCGAGGTGGTGCTGGCCTGGACATGTTTCTACCAAATTATAAATTGGGAAAAACACTTGGGATCGGATCATTTGGCAAGGTGAAAATTGCAGAACATGTATTGACTGGCCATAAGGTTGCAATCAAGATCCTTAACCGACGCAAGATAAAGAACATGGAAATGGAAGAAAAAGTGAGAAGAGAAATAAAAATTTTAAGATTGTTCATGCATCCTCACATTATACGACTTTATGAAGTCATAGAAACTCCAACTGACATATATGTTGTCATGGAGTATGTGAAATCTGGAGAGCTCTTTGATTACATTGTAGAGAAGGGTAGGTTGCAAGAAGATGAAGCTCGTAATTTTTTTCAGCAGATAATCTCTGGTGTGGAGTACTGTCACAGGAATATGGTGGTTCATAGAGATTTGAAGCCTGAGAATTTACTTTTGGACTCCAAATGTAATGTCAAGATTGCTGACTTTGGCTTGAGCAACATCATGCGTGATGGTCACTTTCTTAAGACAAGTTGTGGAAGCCCTAACTATGCAGCTCCTGAGGTTATCTCTGGGAAATTGTATGCTGGACCTGAAGTGGATGTCTGGAGCTGTGGTGTAATTTTATATGCTCTTCTTTGTGGCACTCTTCCTTTTGATGATGAAAACATTCCAAATCTCTTCAAGAAAATAAAGGGTGGGATATACACTCTTCCCAGTCATCTATCACCCGGTGCTAGAGATTTGATACCAGGGATGCTCGTGGTTGACCCTATGAGGAGAATGACCATACCTGAGATCCGTCAACACCCATGGTTCCAAGCTCGACTTCCGCGTTATTTAGCTGTGCCACCACCAGATACACTGCAACAGGCCAAAAAGATTGATGAGGAGATCCTTCAGGAAGTGGTGAAAATGGGATTTGACAGGAATCAATTGGTCGAATCTCTTCGGAACAGGATGCAAAATGAGGGTACTGTGGCATACTATTTGTTATTGGACAACCGATTCCGTGTTTCCAGTGGCTATCTTGGAGCTGAGTTTCAAGAGACCATGGATTCTGGTTTTAACCAAATGCATTCCAGTGAAGTTGCTTCTTCAGTTGTTGGACACCGCTTTCCAGGCTATATGGATTATCCAGGAGTAGGATCGAGGCCACAGTTCCCTGTTGAAAGGAAATGGGCCCTTGGGCTTCAGTCTCGAGCCCATCCTCGTGAAATAATGACTGAGGTCCTTAAAGCTTTGCAAGAATTAAATGTTTGTTGGAAGAAGATTGGTCACTACAACATGAAGTGTAGGTGGGTTGCTGGCATTCCTGGTCATCACGAAGGAATGGTTAACAATAATGTGCATAGTAATCATTACTTTGGAGATGATTCCAACATTATTGAGAATGATGCTGTTTCTACTTCAAATGTGGTCAAATTTGAAGTGCAGCTTTACAAAACTCGGGAAGAAAAGTATCTGCTTGATCTTCAAAGGGTGCAGGGTCCACAGTTTCTTTTCTTGGATCTGTGTGCTGCTTTCCTTGCACAGCTTCGTGTCCTCTAG 1557 0.4239 MDLEMDGPAGRGGAGLDMFLPNYKLGKTLGIGSFGKVKIAEHVLTGHKVAIKILNRRKIKNMEMEEKVRREIKILRLFMHPHIIRLYEVIETPTDIYVVMEYVKSGELFDYIVEKGRLQEDEARNFFQQIISGVEYCHRNMVVHRDLKPENLLLDSKCNVKIADFGLSNIMRDGHFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYALLCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPGMLVVDPMRRMTIPEIRQHPWFQARLPRYLAVPPPDTLQQAKKIDEEILQEVVKMGFDRNQLVESLRNRMQNEGTVAYYLLLDNRFRVSSGYLGAEFQETMDSGFNQMHSSEVASSVVGHRFPGYMDYPGVGSRPQFPVERKWALGLQSRAHPREIMTEVLKALQELNVCWKKIGHYNMKCRWVAGIPGHHEGMVNNNVHSNHYFGDDSNIIENDAVSTSNVVKFEVQLYKTREEKYLLDLQRVQGPQFLFLDLCAAFLAQLRVL 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00787 518 ProSiteProfiles Protein kinase domain profile. 23 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g00787 518 SUPERFAMILY KA1-like 332 517 IPR028375 -
Pumo5g00787 518 SUPERFAMILY UBA-like 285 334 IPR009060 GO:0005515
Pumo5g00787 518 FunFam Non-specific serine/threonine protein kinase 14 353 - -
Pumo5g00787 518 SMART uba_6 298 335 IPR015940 -
Pumo5g00787 518 PANTHER SERINE/THREONINE KINASE 22 340 - -
Pumo5g00787 518 Gene3D Transferase(Phosphotransferase) domain 1 15 354 - -
Pumo5g00787 518 SMART serkin_6 23 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g00787 518 SUPERFAMILY Protein kinase-like (PK-like) 20 291 IPR011009 -
Pumo5g00787 518 ProSitePatterns Serine/Threonine protein kinases active-site signature. 142 154 IPR008271 GO:0004672|GO:0006468
Pumo5g00787 518 Pfam Kinase associated domain 1 475 517 IPR001772 -
Pumo5g00787 518 CDD AMPKA_C 393 515 - -
Pumo5g00787 518 ProSitePatterns Protein kinases ATP-binding region signature. 29 52 IPR017441 GO:0005524
Pumo5g00787 518 CDD STKc_AMPK_alpha 20 275 - -
Pumo5g00787 518 FunFam Non-specific serine/threonine protein kinase 399 516 - -
Pumo5g00787 518 FunFam Non-specific serine/threonine protein kinase 16 102 - -
Pumo5g00787 518 CDD UBA_SnRK1_plant 297 337 - -
Pumo5g00787 518 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 296 336 IPR015940 -
Pumo5g00787 518 ProSiteProfiles Kinase associated domain 1 (KA1) profile. 469 517 IPR001772 -
Pumo5g00787 518 Pfam UBA/TS-N domain 297 333 IPR015940 -
Pumo5g00787 518 Pfam Protein kinase domain 23 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g00787 518 Gene3D Kinase associated domain 1, KA1 399 516 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00787 Pumo-Chr5 15574644 15581791 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g00787 23 275 CBL-interacting serine-threonine protein kinases AT4G24400 52.362 2.42e-92 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_AMPK Pumo5g00787 Pkinase 2.9e-80 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g00787 K07198 - gmx:100796687 1029.62