Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00783 ATGCCCATCTACAGTGTTCCTGACACAATTTCAATGATTGCACAAACTAAGGTTTCTCTTGATAGGATTACATCCTTTCTTTGTCTAGATGACTTGCAGACTGATGTAGTGGAGAAACTTCCACGGGGTAGTTCTGATATAGCAATTGAATTAGTAGATGGAAATTTCTCTTGGAATTTATCTTCCCTCAACACAACACTGAAAAACATAAATCTCACAGTTTTTCATGGTATGAGGGTTGCTGTTTGTGGTACTGTTGCATCAGGCAAATCTAGTTTACTTTCTTGTATAATAGGTGAAATACCTAAGATATCTGGGACCCTGAAGGTGTGTGGATCAAAGGCTTATGTTTCTCAATCACCTTGGGTACAAAGTGGCAAGATAGAAGAGAACATATTATTTGGCAAAGAGATGGACAGGGAAAAGTATGAGAAGGTGCTAGAAGCATGTTCCTTGACAAAAGACCTAGAGGTTCTACCATTTCGTGATCAAACCATCATTGGAGAGAAGGGAATCAATTTGAGTGGTGGACAGAAGCAAAGAGTACAAATAGCCCGTGCTCTTTACCAAGATGCTGACATTTATTTGTTTGATGATCCCTTCAGTGCTGTGGATGCTCATACAGGATCTCATCTCTTTAGGGAGTGTCTGCTTGGCCTTCTCAAAACAAAAACTGTGATATACATAACTCATCAAGTAGAGTTCTTACCTGATGCCGATTTGATATTGGTCATGAGAGAAGGAAGGATAACTCAATCAGGAAAATACAAAGACATTCTCAGGTCAGACACTGATTTTATGGAACTAGTAGGTGCACATAGAGAAGCTTTGTCTTCAGTTATGTCCTCAGTGAGAATGTCCACATTTGAAACAGTGAATATCTCCACAAAGGACACAGATTCACTAAGAGATTTTGAACTTGAGCAAAAAGAGAAAAACATAGTTGATCATCATGATAAGTCAGATGACACTGATAAGCCAAAAGGCCAACTTGTTCAAGAAGAAGAACGAGAAAAGGGTAGAGTTCAGTTTAAGGTCTACTGGAAATACATCACAACAGCTTATGGAGGAGCTTTTGTACCCTTCATATTGCTCTCACAGACACTCGCCATGTTTTTTCAGCTTGGAAGCGACTATTGGATGACTTTAGAAACTCCTGTTTCTGCAACTGCGGAAACTGGTATTGAAAGCTTTACACTTATGGTTGTCTATGTTGCTTTGGCGATTGGAAGTTCCTTTTCCATCCTTGTCATATCAGTTCTTACTGTGATAGCTGGATACAAAACAGCCACTATGCTCTTTAATAAAATGCATTTGTGTTTTTTCCGAGCACCAATGTCATTTTTTGATGCCAACCCAAGTGGGAGAATCCTTAATAGAGCTTCAACAGACCAAAACACAATAGACATAAGCATTTCAGATTCGGTATGGGAAATTACCTTCAGTCTGATTCACCTCTTGGGAAATATTGTTGTGATGTCTCAAGCTGCATGGCAGGTGTTTATATTATTGATTCCTATCATGACAGCTTGCATATGGTATCAGCGATACTATTCTGCATCAGCACGGGAATTGGCGCGATTAGTTGGTATATGCGAAGCTCCTGTTATACAACATTTTTCGGAAACACTTTCTGGATCAACAACCGTAAGATGTTTTGAGCAACAATCGAGATTTAATGACATGCATATGAAACTGATTGATAGATATTCTCAACCCAGATTGTACAGTGCCAGTGCAATGGCATGGCTGAGTTTCAGATTGGATATTCTATCCACTATAACATTTGCCTTCTGTTTGGTTTTCTTGATATCCTTTCCAAATTCAATTACTTCTCCGGGCATTGCGGGATTGGCTGTGACATATGGGCTTAGTCTAAATCAACTACAATTTAGTTTAATCTGGTATCTTTGCAATTTGGAAAATGAAATTATATCCGTAGAAAGAATACTTCAGTACACCTCCATCCCAAGTGAAGCTCCTCTTGTAATAAAAGACAACCAACCAGATCATTCTTGGCCATCATTTGGAGAGGTTCATATCCAGGATTTACAGGTTCGATATGCGCCACATTTGCCTCTAGTTTTACATGGTCTTACTTGCACTTTCGCTGCTGGAGCAAAAACTGGCATTGTGGGAAGAACAGGAAGTGGAAAATCAACTCTAGTGCAAACACTTTTTCGACTTCTTGAACCTGTTGCTGGACAAATATTGATAGATAGTGTTAACATATCTTTGATTGGAATTCATGATTTGAGGTCCAGGCTGAGCATTATTCCACAGGATCCAACAATGTTTGAAGGGACTGTACGAAGCAACTTGGACCCCCTGGAAGAATACACAGATGAACAGATTTGGGAGGCTCTAGATATGTGCCAACTTGGAGATGAAGTAAGGAAGAAAGAAGGGAAGCTTGACTCCACAGTTACTGAGAATGGAGAAAATTGGAGTATGGGCCAAAGGCAGTTGGTGTGCCTTGGCCGCGTTCTACTTAAGAAAAGCAAGATATTGGTGCTTGATGAAGCTACTGCCTCAGTTGATATAGCCACAGATAATATTATTCAGCAAACAGTGAAGCAACATTTTTCAGAATGCACAGTCATTACCATTGCTCATAGAATAACTTCAATCCTGGATAGTGACATGGTTCTGTTTCTAAATCAAGGGCTCATTGAGGAATATGATTCACCAAAGACACTGCTTAAGAACAAATCTTCATCTCTTGCTCAACTAGTTGCAGAATACACAAGGAGGTCAAACTCTGGTTTTGGAACTTAA 2778 0.3952 MPIYSVPDTISMIAQTKVSLDRITSFLCLDDLQTDVVEKLPRGSSDIAIELVDGNFSWNLSSLNTTLKNINLTVFHGMRVAVCGTVASGKSSLLSCIIGEIPKISGTLKVCGSKAYVSQSPWVQSGKIEENILFGKEMDREKYEKVLEACSLTKDLEVLPFRDQTIIGEKGINLSGGQKQRVQIARALYQDADIYLFDDPFSAVDAHTGSHLFRECLLGLLKTKTVIYITHQVEFLPDADLILVMREGRITQSGKYKDILRSDTDFMELVGAHREALSSVMSSVRMSTFETVNISTKDTDSLRDFELEQKEKNIVDHHDKSDDTDKPKGQLVQEEEREKGRVQFKVYWKYITTAYGGAFVPFILLSQTLAMFFQLGSDYWMTLETPVSATAETGIESFTLMVVYVALAIGSSFSILVISVLTVIAGYKTATMLFNKMHLCFFRAPMSFFDANPSGRILNRASTDQNTIDISISDSVWEITFSLIHLLGNIVVMSQAAWQVFILLIPIMTACIWYQRYYSASARELARLVGICEAPVIQHFSETLSGSTTVRCFEQQSRFNDMHMKLIDRYSQPRLYSASAMAWLSFRLDILSTITFAFCLVFLISFPNSITSPGIAGLAVTYGLSLNQLQFSLIWYLCNLENEIISVERILQYTSIPSEAPLVIKDNQPDHSWPSFGEVHIQDLQVRYAPHLPLVLHGLTCTFAAGAKTGIVGRTGSGKSTLVQTLFRLLEPVAGQILIDSVNISLIGIHDLRSRLSIIPQDPTMFEGTVRSNLDPLEEYTDEQIWEALDMCQLGDEVRKKEGKLDSTVTENGENWSMGQRQLVCLGRVLLKKSKILVLDEATASVDIATDNIIQQTVKQHFSECTVITIAHRITSILDSDMVLFLNQGLIEEYDSPKTLLKNKSSSLAQLVAEYTRRSNSGFGT 925
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00783 925 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 2 914 - -
Pumo5g00783 925 FunFam ABC transporter C family member 5 34 281 - -
Pumo5g00783 925 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 670 905 IPR027417 -
Pumo5g00783 925 Pfam ABC transporter transmembrane region 363 605 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pumo5g00783 925 SUPERFAMILY ABC transporter transmembrane region 360 661 IPR036640 GO:0005524|GO:0016020
Pumo5g00783 925 Gene3D ABC transporter type 1, transmembrane domain 322 660 IPR036640 GO:0005524|GO:0016020
Pumo5g00783 925 ProSitePatterns ABC transporters family signature. 174 188 IPR017871 GO:0005524|GO:0016887
Pumo5g00783 925 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 49 272 IPR003439 GO:0005524
Pumo5g00783 925 MobiDBLite consensus disorder prediction 313 335 - -
Pumo5g00783 925 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 679 913 IPR003439 GO:0005524
Pumo5g00783 925 CDD ABCC_MRP_domain2 677 897 - -
Pumo5g00783 925 FunFam ABC transporter C family member 5 323 660 - -
Pumo5g00783 925 CDD ABC_6TM_ABCC_D2 360 654 IPR044726 GO:0140359
Pumo5g00783 925 SMART AAA_5 76 249 IPR003593 GO:0016887
Pumo5g00783 925 SMART AAA_5 705 890 IPR003593 GO:0016887
Pumo5g00783 925 Pfam ABC transporter 696 844 IPR003439 GO:0005524
Pumo5g00783 925 Gene3D - 30 293 IPR027417 -
Pumo5g00783 925 CDD ABCC_MRP_domain1 49 249 - -
Pumo5g00783 925 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 358 642 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pumo5g00783 925 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 46 271 IPR027417 -
Pumo5g00783 925 Gene3D - 662 915 IPR027417 -
Pumo5g00783 925 Pfam ABC transporter 67 201 IPR003439 GO:0005524
Pumo5g00783 925 FunFam ABC transporter C family member 3 662 914 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00783 Pumo-Chr5 15514110 15519238 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g00783 677 912 Calmodulin-binding Proteins AT2G36910 29.167 1.38e-27 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g00783 - K05666 gmx:100795627 1687.55