Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00780 ATGCACCCATTGGGACCCGCGAATGTCTCACGACCGTTCGCGACATCCTCGAAAATCCTGCGCGGATCTCGCGACTTGGTAGATAGAGAGAGAGAAAAAGATTGGATTGTGTCGTTTTTGGAAGAGAGAGAAAAAACACACAGAAACGAAGGGAAGAGCAACAAAGCCACCATTTTTCCGTCCTTTCTCAATGCTTCTCTTTCTGCGTCTCGCTCCGTTTTCTCTCTGAAAGCTTCTTCTTCGATTCGGTTTCCACCGCGACCCGTTTCCGAGTCGGGTCGACCCGCCGCTAAAATGGGCTGCGCGAGCTCGAAGAAGGCGGTCGCCGGAGGTTCCACGCCGGAGGAGCCGTGCGTGGTGCGGCGTTCGAGCTCGAGCTTGAGCTCGCGGAAGCGGAACAATGGGTCGGGGCGAAGCCGAAACGGCGTAGTGGAGGAGGCGCGTGTGGTGGAGGCGCGTGAGGGGGAGGTGGTGAAGAAGGGGAGCTTGAGAGGGGGGAATGGGTCGGTGTCGTTGAGGTTGTCGCATAGGTTTGTGGAGGCTGAACAGAATGCTGCTGGGTGGCCACCTTGGTTTACCTCTGTTGCTGGGGAAGCCATTCAAGGGTGGGTCCCTCTCAAAACGGATTCTTTTGAGAGATTGGATAAGATTGGACAAGGTACATATAGCAGTGTATTCCGAGCACGCGAAGTTGAAACTGGAAGGATGTTTGCACTGAAGAAGGTGCGCTTTGACAAATTTCAAGCCGAAAGCATTAGGTTCATGGCAAGAGAAATATTAATTCTCCGCACACTTGATCACCCAAACATAATGAAATTGGAGGGTATAATCACTTCACAACTATCAAATAGCATATACCTTGTATTTGAATACATGGAGCATGACCTTGCTGGCCTAGTAGCTTCTCCTGATATAAAGTTCACTGATTCACAGATCAAGTGTTACATGAAACAACTATTAAGTGGAATTGAGCATTGTCACCTTCGAGGTATCATGCATCGAGATATTAAAGTATCTAATATACTAGTGAACAATGAAGGTGTTCTCAAGATAGGAGATTTTGGATTAGCAAATACCCTTAGCCCAAATAGTAAGCAACCCTTAACAAGTCGTGTAGTGACTCTATGGTATCGTCCTCCCGAGCTCTTGTTGGGATCAACAAATTATGGAGTTTCAGTGGATCTATGGAGTGTTGGCTGTGTATTTGCTGAACTTTTTCTGGGGAAGCCCATCCTTAAGGGGAGAACTGAGGTTGAACAATTACACAAAATTTTCAAGCTTTGTGGTTCTCCACCTGAGGAGTTCTGGAAAAAGAATAAGCTTCCTCTGGCCACAATGTTTAAGCCTCAGACTAATTACGAAACCACTCTTCAGGAGAGGTGTAGAGGTTTTCCTGCAACTGCTGTAAACGTACTTGAGACTTTACTTTCCATTGATCCATCCAAGCGCGGGACTGCCTCCTCTGCACTCATATCTGAGTATTTCAGATCCAAGCCATATGCTTGTAATCCATCGCTCCTGCCAAAGTATCCACCAAGCAAAGAAATGGATGCCAAAAATTGGGAAGATGCGCGCAGAAAAAAGAATGGAGGTAAAGTGAGAGAGACTATAACATCAAAAAGGCAAAGACGAGTCCACAGAGTTTCCCATGACCCTATCAATTTCAACAAACCAGCTTTGAAAGAGGAAATGCAGAATATTTCTCAAAATGCTGGTACAGATGATGGTAGGGCACATGTTATAAAATCAAAAGTAGGAACTATGCATAAAGAGCAACCAAAGCCTTCATATGATGCAAAGTCAGAGGCTGCCCAAGTGGAGAATGGTTGCAATGGATACAGTGTATACTCAGGACCAGCACCAGTTTCAGGATCTAGTGGCTTTACATGGGCTAAAAGTAGAAAACCAAAAGCTTCATCCCTATTGTCAGATGGCTCAAGAAGCAAAATCAGTGCTCTGGATCCAACCTTTGCAAAAGGCACATATGATTTAACAGAACATGGGATAGAAGTTTCAGAAAGGAAACATAGTTACAACACAAGCCATCAGGATGAGACTTCCAACTATGTATCACAAAAGTACCAGGCTCCTCGTGTTCAACAAAAATCATTTGATGTAGCTGATACATACAACTCAAATTATTACATGGAATTTGATTTCACAGATAAAATGGATGCTTTGACAGATACTCAGGGCCACAGAAAACATGGTGAGCCTGTGGAGCAATCAGTACCAAAAATAATCCAATCAAATAAAAATGATGAGATGTTGCATTGGAATGATAATAGTATGCGGCAATCTCTTCGTAAATCAAGGTTGGGAAGAGGTAAAGAGACTACTTTCATCTAG 2349 0.447 MHPLGPANVSRPFATSSKILRGSRDLVDREREKDWIVSFLEEREKTHRNEGKSNKATIFPSFLNASLSASRSVFSLKASSSIRFPPRPVSESGRPAAKMGCASSKKAVAGGSTPEEPCVVRRSSSSLSSRKRNNGSGRSRNGVVEEARVVEAREGEVVKKGSLRGGNGSVSLRLSHRFVEAEQNAAGWPPWFTSVAGEAIQGWVPLKTDSFERLDKIGQGTYSSVFRAREVETGRMFALKKVRFDKFQAESIRFMAREILILRTLDHPNIMKLEGIITSQLSNSIYLVFEYMEHDLAGLVASPDIKFTDSQIKCYMKQLLSGIEHCHLRGIMHRDIKVSNILVNNEGVLKIGDFGLANTLSPNSKQPLTSRVVTLWYRPPELLLGSTNYGVSVDLWSVGCVFAELFLGKPILKGRTEVEQLHKIFKLCGSPPEEFWKKNKLPLATMFKPQTNYETTLQERCRGFPATAVNVLETLLSIDPSKRGTASSALISEYFRSKPYACNPSLLPKYPPSKEMDAKNWEDARRKKNGGKVRETITSKRQRRVHRVSHDPINFNKPALKEEMQNISQNAGTDDGRAHVIKSKVGTMHKEQPKPSYDAKSEAAQVENGCNGYSVYSGPAPVSGSSGFTWAKSRKPKASSLLSDGSRSKISALDPTFAKGTYDLTEHGIEVSERKHSYNTSHQDETSNYVSQKYQAPRVQQKSFDVADTYNSNYYMEFDFTDKMDALTDTQGHRKHGEPVEQSVPKIIQSNKNDEMLHWNDNSMRQSLRKSRLGRGKETTFI 782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00780 782 MobiDBLite consensus disorder prediction 524 547 - -
Pumo5g00780 782 MobiDBLite consensus disorder prediction 524 538 - -
Pumo5g00780 782 FunFam probable serine/threonine-protein kinase At1g54610 198 293 - -
Pumo5g00780 782 MobiDBLite consensus disorder prediction 84 144 - -
Pumo5g00780 782 SMART serkin_6 211 495 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g00780 782 CDD STKc_CDK9_like 211 495 - -
Pumo5g00780 782 Gene3D Transferase(Phosphotransferase) domain 1 294 535 - -
Pumo5g00780 782 SUPERFAMILY Protein kinase-like (PK-like) 205 500 IPR011009 -
Pumo5g00780 782 Pfam Protein kinase domain 211 495 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g00780 782 FunFam probable serine/threonine-protein kinase At1g54610 294 534 - -
Pumo5g00780 782 Gene3D Phosphorylase Kinase; domain 1 198 293 - -
Pumo5g00780 782 MobiDBLite consensus disorder prediction 118 140 - -
Pumo5g00780 782 ProSiteProfiles Protein kinase domain profile. 211 495 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g00780 782 ProSitePatterns Serine/Threonine protein kinases active-site signature. 331 343 IPR008271 GO:0004672|GO:0006468
Pumo5g00780 782 PANTHER CELL DIVISION PROTEIN KINASE 209 499 - -
Pumo5g00780 782 ProSitePatterns Protein kinases ATP-binding region signature. 217 240 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00780 Pumo-Chr5 15500658 15506618 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g00780 203 528 Core Cell Cycle Gene Families AT5G10270 47.143 8.14e-104 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Pumo5g00780 Pkinase 3.6e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g00780 - - gmx:100781059 1187.94