Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00779 ATGACGCTCGTCTCCAGCTTCTTCGGCTCCGACGCCGCCGGCGACTGCCGCTCCTTCTCGCAGCTCCTCGCCGGCGCCATGGCCTCCCCGATGGCCTTCTCCGCCGCCGCAGCCGCCGCCGACAACTCCGGCAAGGACGACGATGGGCCCCACAAGGGATTCAAGCAGAGTAGACCCATGAATTTGGTCATTGCTCGTTCCCCTGTCTTCACTGTGCCACCCGGGTTGAGCCCTTCTGGGTTTCTTAACTCCCCTGGCTTCTTTTCCCCTCAGAGCCCCTTTGGGATGTCCCATCAACAGGCTTTAGCACAGGTTACAGCTCAAGCTGTCCTAGCTCAATCTCATATGCATATGCAAGCTGATTACCAGATGCCTTCAGTAACAGCTTCCACCGAACAACCTGTACAGCAGCCTTCTCTTGCTCTAAATGAAGCTTCAGAGCAGCAAGTGGTATCATGTGTATCATCTGTATCAGAACCTAGAAATGCTCAACTCGAAACATCAGAGCTCTCACAGGCTGATAAGAAATATCAACCATCTTCCCAGGCCATTGACAAACCTGCAGATGATGGCTACAACTGGCGTAAGTATGGGCAGAAGCAGGTTAAGGGCAGTGAGTATCCACGAAGCTATTACAAGTGCACACATCTGAATTGCATTGTGAAGAAAAAGGTTGAGCGTGCCCCTGATGGTCACATAACTGAAATTATCTATAAAGGCCAGCATAACCATGAAAAGCCTCAGGCAAATAGGCGTGTCAAGGATAATAGTGATTCAAATGGAAATGTAACTGTTCAGCCCAAGCCTGAGTCAAACTCACAAGGTTGGGTTGTTGGACAATTAAACAAGCTTAGTGAAAACATTCCTGATTCTTCAGTTCCTGAAAGTGACCAGATCTCCAATCAAGGGGCTCCCAGGCAACTATTACCTGGGTCAAGTGAGAGTGAGGAAGTGGGTGATGTAGATAATAGGGAAGAGGCAGATGACAGCGAGCCAAACCCTAAGAGAAGGAACACTGATGTTGGGGTTTCTGAAGTACCTCCGTCACAGAAGACTGTCACAGAACCCAAAATCATTGTGCAAACAAGAAGTGAAGTTGATCTTTTGGATGATGGCTACAGGTGGCGAAAGTATGGTCAGAAAGTGGTGAAGGGAAACCCTCATCCGAGGAGTTATTACAAATGCACTAGTGCAGGATGCACCGTGCGTAAGCATGTTGAGAGAGCTTCAACGGACCCCAAAGCTGTCATAACCACGTATGAGGGTAAACATAATCATGATGTGCCTGCTGCTAGAAACAGCAGCCACAACACAGCTAGTAGCAATTCAATGCCGTTAAAACCGCATAACGCTGGTGCCGGAGAAGCATCCTTTGCTTAA 1380 0.4913 MTLVSSFFGSDAAGDCRSFSQLLAGAMASPMAFSAAAAAADNSGKDDDGPHKGFKQSRPMNLVIARSPVFTVPPGLSPSGFLNSPGFFSPQSPFGMSHQQALAQVTAQAVLAQSHMHMQADYQMPSVTASTEQPVQQPSLALNEASEQQVVSCVSSVSEPRNAQLETSELSQADKKYQPSSQAIDKPADDGYNWRKYGQKQVKGSEYPRSYYKCTHLNCIVKKKVERAPDGHITEIIYKGQHNHEKPQANRRVKDNSDSNGNVTVQPKPESNSQGWVVGQLNKLSENIPDSSVPESDQISNQGAPRQLLPGSSESEEVGDVDNREEADDSEPNPKRRNTDVGVSEVPPSQKTVTEPKIIVQTRSEVDLLDDGYRWRKYGQKVVKGNPHPRSYYKCTSAGCTVRKHVERASTDPKAVITTYEGKHNHDVPAARNSSHNTASSNSMPLKPHNAGAGEASFA 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00779 459 FunFam WRKY transcription factor 33 356 422 - -
Pumo5g00779 459 MobiDBLite consensus disorder prediction 431 447 - -
Pumo5g00779 459 SMART WRKY_cls 369 428 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo5g00779 459 SMART WRKY_cls 188 246 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo5g00779 459 Gene3D WRKY domain 174 248 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pumo5g00779 459 Gene3D WRKY domain 354 430 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pumo5g00779 459 MobiDBLite consensus disorder prediction 156 194 - -
Pumo5g00779 459 MobiDBLite consensus disorder prediction 237 253 - -
Pumo5g00779 459 MobiDBLite consensus disorder prediction 237 354 - -
Pumo5g00779 459 MobiDBLite consensus disorder prediction 156 179 - -
Pumo5g00779 459 SUPERFAMILY WRKY DNA-binding domain 361 429 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pumo5g00779 459 Pfam WRKY DNA -binding domain 370 426 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo5g00779 459 Pfam WRKY DNA -binding domain 189 245 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo5g00779 459 ProSiteProfiles WRKY domain profile. 183 247 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo5g00779 459 ProSiteProfiles WRKY domain profile. 364 429 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo5g00779 459 FunFam WRKY transcription factor 176 248 - -
Pumo5g00779 459 MobiDBLite consensus disorder prediction 254 309 - -
Pumo5g00779 459 MobiDBLite consensus disorder prediction 421 459 - -
Pumo5g00779 459 SUPERFAMILY WRKY DNA-binding domain 187 247 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pumo5g00779 459 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 84 443 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00779 Pumo-Chr5 15492244 15497524 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g00779 370 444 WRKY Transcription Factor Family AT2G03340 50.667 5.21e-18 84.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Pumo5g00779 WRKY 1.2e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g00779 - - gmx:100170684 817.379