Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00773 ATGGCCACAATGCTTTGTGGAGACCTCAAAAACCATAATATTGCGGCCACAACTGTACCTTGTCAGTGTGGAACCTGGCATATCAACCTAATGGGGTTGAAATTTACAAAGCAGGGACCACCTAAAATTGAGGATCTAAGTTTACATCATCAAATGATAAATTACCTTACCAAGAATTTTATTCGCAACTTGGTATCTAAGCAACGAAGAAGAATGCTTATTGCTGGTTATGATCTTGACATGTCATATATCACAGACCGTGTGTTAGCAATGTCATTTCCTGCACAACGTATGCGAGCAATGTATCGAAATCCTCTATGGCAAGTCAAATCTGTGTTGGACATGAGACATTATGAGCATTATAAGATCTATAATCTCTGTATAGAAGAAAGTTATGATCCAGATAACTTCTATGGACGCGTGGAAGCATACCCCTTTGATGATAACCATGTGCCATCTCTTGAAATGATCAAAGCTTTCTGTGAAAGTGTGGATTCATGGCTGTCAAGTGACCCAAAAAACATTGCTGTTATTCATTGCATGGCAGGAAAAGGTAGAACTGGATTAATGGTGTGTGCATACCTAACTTATTGCGGCATGTCAGCAGATGAGGCTCTTCAATTGTATGCAGATAGACGGACAACCAATAATGAAGGAGTAAGTTATGTTAGGTATCAATACCAAGCCAACGTCGTTACGTGGCATACTGGGATAATCTACTTTCAAATTCCTATCCCAAGGGGAACTGGAAATGGGCTGACAAAGGTGAACTTACCTCAACCATGTAGCAGAGAATTGCGGCGAATTCGGCTTTATGATACAATCAACATTGAGACGATATTTTTTGTTATCTCAGAGCTACACGAGATTCCTAATGAGGTTTATCGTCCACCAGTGGAAGCTTATCGTAGCTGTTGTAGACAGATTAAGAAAGGGTATCAGAGAAACAATAGCCCTCGCTATTATATCTCTGTTCTTGAAGGTGATAAAGATGGAAAGCAATCGGAAATAGAAGAACCTCGCATTGTAATTCAAATGGACACAGAGAGTCCAGCAATATACCAAAAATCGTGTTTGGACCATTATTTTGATAAACCTATACAAGTAACTGGAGATGTACGTGTCATATTCTATGAGAAAATGATAGGAGGTCGCCTTTTCTACTGCTTGTTTTAA 1176 0.3937 MATMLCGDLKNHNIAATTVPCQCGTWHINLMGLKFTKQGPPKIEDLSLHHQMINYLTKNFIRNLVSKQRRRMLIAGYDLDMSYITDRVLAMSFPAQRMRAMYRNPLWQVKSVLDMRHYEHYKIYNLCIEESYDPDNFYGRVEAYPFDDNHVPSLEMIKAFCESVDSWLSSDPKNIAVIHCMAGKGRTGLMVCAYLTYCGMSADEALQLYADRRTTNNEGVSYVRYQYQANVVTWHTGIIYFQIPIPRGTGNGLTKVNLPQPCSRELRRIRLYDTINIETIFFVISELHEIPNEVYRPPVEAYRSCCRQIKKGYQRNNSPRYYISVLEGDKDGKQSEIEEPRIVIQMDTESPAIYQKSCLDHYFDKPIQVTGDVRVIFYEKMIGGRLFYCLF 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00773 391 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 83 228 IPR029021 -
Pumo5g00773 391 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 50 391 - -
Pumo5g00773 391 ProSiteProfiles Phosphatase tensin-type domain profile. 70 233 IPR029023 -
Pumo5g00773 391 ProSitePatterns Tyrosine specific protein phosphatases active site. 178 188 IPR016130 GO:0016311|GO:0016791
Pumo5g00773 391 Pfam Tyrosine phosphatase family 164 223 IPR026893 GO:0004721
Pumo5g00773 391 Gene3D Protein tyrosine phosphatase superfamily 56 237 IPR029021 -
Pumo5g00773 391 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 158 213 IPR000387 GO:0016311|GO:0016791
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00773 Pumo-Chr5 15434010 15437822 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g00773 31 391 Protein tyrosine phosphatase (PTP) family AT5G39400 62.568 1.06e-166 471
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g00773 K01110 - gmx:100809938 664.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g00773 5 15434010 15437822 Pumo5g00773 5 15434010 15437822 ECH