Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00758 ATGGAATACAGCAATTGGACTGAATCGCTGCAAACCGAAACCCCACTTCCCTCTTTCCCACAACCCTCATCATATCCTATTCCATCTCACACTACCCATTACCCCTCTTACCCTCAAAACCCTAACCCCTCTTCCTCTTCCTCTTCTTCTTCTCTTCCCCTCAACCCTCCCGGTGTTGATTCCCAAACCCCATTGAACCCTATTAGCTATGCGCCTCATGAACCCGTTCCCGCTTTGATCTACGCTCAGAGCCATCTTGGGCCTAATTCCAACGCGTCTTCTGGCTACTGCTTGGACCAGAATTGGGCTGCCAGAGAGGCTGTTAGGCAATTTGGTACTGACCCTACTCTCTATGCACCTGGCATCTCTTTGCCATCCAATGGCTCAGAACAGTTGGCTATGGCAAATCCTAGCTCTGTGTGGTGGACAAATACCACAACTCAACCTCATGTCAATGGAATACTGAAGAAAAAACAAAAGAAAGCTAAAACTAAGGTTGTGCAACCTGCGTTTTGTGAAGTCTGCAAGATAGAATGCACCAGCAAGGAAGTGCTGGACCAGCATAAATTAGGAAAGAAGCACAAGAAGAACGTGGAGAAACTAAGAGAATCATTGACACCTACCCAAACCCAAGTTCAACCATCTGGGTCGTCTAAACCTATAATAGGACCCCAATTACCGGACGATAAGAGCAAATCCATCAGTGGGAATAAGAGTAAGAGAAAAAAAGTTGAAAGTGCAGAGGATTTGGAGAAAAAGAAAAGGAAGGTTCTTGAGGGTGGGGCAGCAGTTGAAGCAGTTAAGATATGTGCTATATGTAATGTGGTGTGTAATAGTGAGACAGTTTATAATTATCATCTTACAGGACAAAAGCATGCTGCAATGCTGAAGAAAGCATCGGATCATACGAAATCCAATGCCAGTTGA 927 0.4498 MEYSNWTESLQTETPLPSFPQPSSYPIPSHTTHYPSYPQNPNPSSSSSSSSLPLNPPGVDSQTPLNPISYAPHEPVPALIYAQSHLGPNSNASSGYCLDQNWAAREAVRQFGTDPTLYAPGISLPSNGSEQLAMANPSSVWWTNTTTQPHVNGILKKKQKKAKTKVVQPAFCEVCKIECTSKEVLDQHKLGKKHKKNVEKLRESLTPTQTQVQPSGSSKPIIGPQLPDDKSKSISGNKSKRKKVESAEDLEKKKRKVLEGGAAVEAVKICAICNVVCNSETVYNYHLTGQKHAAMLKKASDHTKSNAS 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00758 308 MobiDBLite consensus disorder prediction 203 220 - -
Pumo5g00758 308 Gene3D Classic Zinc Finger 237 300 - -
Pumo5g00758 308 Gene3D Classic Zinc Finger 154 201 - -
Pumo5g00758 308 SUPERFAMILY beta-beta-alpha zinc fingers 265 298 IPR036236 -
Pumo5g00758 308 SMART ZnF_U1_5 265 299 IPR003604 GO:0003676|GO:0008270
Pumo5g00758 308 SMART ZnF_U1_5 167 201 IPR003604 GO:0003676|GO:0008270
Pumo5g00758 308 SUPERFAMILY beta-beta-alpha zinc fingers 164 202 IPR036236 -
Pumo5g00758 308 MobiDBLite consensus disorder prediction 25 68 - -
Pumo5g00758 308 MobiDBLite consensus disorder prediction 233 252 - -
Pumo5g00758 308 MobiDBLite consensus disorder prediction 189 252 - -
Pumo5g00758 308 SMART c2h2final6 170 194 IPR013087 -
Pumo5g00758 308 SMART c2h2final6 268 292 IPR013087 -
Pumo5g00758 308 MobiDBLite consensus disorder prediction 1 70 - -
Pumo5g00758 308 Pfam Zinc-finger of C2H2 type 269 292 - -
Pumo5g00758 308 Pfam Zinc-finger of C2H2 type 171 194 - -
Pumo5g00758 308 MobiDBLite consensus disorder prediction 1 18 - -
Pumo5g00758 308 PANTHER ZINC FINGER PROTEIN 385B-LIKE 1 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00758 Pumo-Chr5 15301350 15303936 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g00758 172 302 C2H2 Transcription Factor Family AT5G61190 29.333 3.25e-08 53.1