Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00754 ATGGCTAGGTCTCACAATTTGGTTCCTTTTGCAATTTTAATGGTTCTCTTTGTACCAGCTTTGTCATATGACATTAACAGCCGACGAGATAAATGGCATAGTGCGCATGCAACTTTCTATGGTGACATGCAAGGAGGAGACACCATGCAGGGTGCTTGTGGATATGGTGATCTCTACCAGCAAGGATATGGGCTTGAAACCACAGCCCTAAGCATAGCCCTCTTCAACAATGGCCTCACATGTGGTGCATGCTTTGAGATAAAGTGTGTGAAGGACCCCCAATGGTGCATTCCCAACGCAGGCACAATCAAAGTGACCGCAACAAATTTTTGTCCCCCCAATTACTCTCCACCTAATTTCGACCATTGGTGCAACCCTCCACAGAAGCACTTCGACTTGTCCATGAAAATGTTCACCACAATTGCCGTATACAAAGCAGGGATCATCCCAGTCATGTATCGTAGAGTCCCATGCTCCAAATCTGGGGGTGTCAAGTTTGAGATCAAAGGGAACCCTTATTGGTTGCTGGTTTTGTTGTACAACGTTGGCAATGCTGGTGATGTTACTCAAGTGAGCATCAAAGGCTCCAACACTGGCTGGCAATCTATGTCACGTGTGTGGGGACAAAATTGGGTTACTGGGTCCAATTTGGTGGGACAAGCTTTGTCATTTTCAGGTCACTACTAG 687 0.4629 MARSHNLVPFAILMVLFVPALSYDINSRRDKWHSAHATFYGDMQGGDTMQGACGYGDLYQQGYGLETTALSIALFNNGLTCGACFEIKCVKDPQWCIPNAGTIKVTATNFCPPNYSPPNFDHWCNPPQKHFDLSMKMFTTIAVYKAGIIPVMYRRVPCSKSGGVKFEIKGNPYWLLVLLYNVGNAGDVTQVSIKGSNTGWQSMSRVWGQNWVTGSNLVGQALSFSGHY 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00754 228 Gene3D - 162 226 IPR036749 -
Pumo5g00754 228 PANTHER EXPANSIN-A15 11 225 IPR002963 GO:0009664
Pumo5g00754 228 Pfam Expansin C-terminal domain 164 224 IPR007117 -
Pumo5g00754 228 PRINTS Expansin signature 89 100 IPR002963 GO:0009664
Pumo5g00754 228 PRINTS Expansin signature 103 113 IPR002963 GO:0009664
Pumo5g00754 228 PRINTS Expansin signature 138 151 IPR002963 GO:0009664
Pumo5g00754 228 PRINTS Expansin signature 62 76 IPR002963 GO:0009664
Pumo5g00754 228 PRINTS Expansin signature 121 138 IPR002963 GO:0009664
Pumo5g00754 228 PRINTS Expansin signature 162 174 IPR002963 GO:0009664
Pumo5g00754 228 PRINTS Expansin signature 174 195 IPR002963 GO:0009664
Pumo5g00754 228 PRINTS Expansin signature 209 228 IPR002963 GO:0009664
Pumo5g00754 228 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 50 163 IPR007112 -
Pumo5g00754 228 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 173 228 IPR007117 -
Pumo5g00754 228 SMART dpbb_1 67 153 IPR007112 -
Pumo5g00754 228 Gene3D - 17 159 IPR036908 -
Pumo5g00754 228 SUPERFAMILY Barwin-like endoglucanases 14 181 IPR036908 -
Pumo5g00754 228 SUPERFAMILY PHL pollen allergen 160 224 IPR036749 -
Pumo5g00754 228 CDD DPBB_EXPA_N 32 158 - -
Pumo5g00754 228 Pfam Lytic transglycolase 67 153 IPR009009 -
Pumo5g00754 228 PRINTS Expansin/Lol pI family signature 49 67 IPR007118 GO:0005576
Pumo5g00754 228 PRINTS Expansin/Lol pI family signature 71 89 IPR007118 GO:0005576
Pumo5g00754 228 PRINTS Expansin/Lol pI family signature 146 162 IPR007118 GO:0005576
Pumo5g00754 228 PRINTS Expansin/Lol pI family signature 200 214 IPR007118 GO:0005576
Pumo5g00754 228 PRINTS Expansin/Lol pI family signature 31 46 IPR007118 GO:0005576
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00754 Pumo-Chr5 15276154 15278295 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g00754 19 224 Expansin Gene Family AT5G39270 64.563 7.66e-99 287
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g00754 - - gmx:100789595 412.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g00754 5 15276154 15278295 Pumo5g00754 5 15276154 15278295 ECH