Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00743 ATGGCGTTCTTAAATAAAATTGGAAATCTGCTCAAGAATTCTGCTGTCAAGCACATCAATCAAGATTTTTCTGTGTCTACTCCTTCACTTTTCCTAGCAATTAGATCCATGTCATCTGCAAAGCTTTTCGTTGGAGGTATTTCTTACAGCACTGATGATATGAGTTTGCAAGAGTCTTTTGCTCGCTATGGAGAAGTAATTGATGCCAAGGTTATTATGGATCGTGAAACTGGCAGGTCAAGAGGTTTTGCCTTCGTAACTTTTGCAACAAGTGAGGATGCATCTTCTGCCATTCAGGGCATGGATGGCCAGGACCTTCATGGTCGGAGGATACGGGTGAATTATGCTACAGAAAGGTCACGTCCAGGGTTTGGTGGTGGTGGCGGTGGCTATGGTGGAGGTGGATATGGCGGTGGTGGCGGGGGCTATGGTGGAGGCAGCGGCTATGGTAGAGGTGGCAGTGGTAATTATGGAGGTAATGACAATAGGGGTGGAAACTATGGAAGCGGTGGTTATGGTGTTACAAGCAGCTATGGTGGTGGCAATGCTGAAACTAGTTACACTGGTGGTGCTAATGCTAGTAATTACCAATTCAATGAAAATTCTGTTGGAGATCTTGGCTCAGCTAGCGGTGAATTCAGCAGCAACCAGAATGACGGAACAGGTGCAGACAATGATGAATTCATTGAGCCACTTGAAGACAATGTGAGGGAGAACAATGATGAACCTGATGACTATGCTCAGAACCGGGGATGA 756 0.459 MAFLNKIGNLLKNSAVKHINQDFSVSTPSLFLAIRSMSSAKLFVGGISYSTDDMSLQESFARYGEVIDAKVIMDRETGRSRGFAFVTFATSEDASSAIQGMDGQDLHGRRIRVNYATERSRPGFGGGGGGYGGGGYGGGGGGYGGGSGYGRGGSGNYGGNDNRGGNYGSGGYGVTSSYGGGNAETSYTGGANASNYQFNENSVGDLGSASGEFSSNQNDGTGADNDEFIEPLEDNVRENNDEPDDYAQNRG 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00743 251 MobiDBLite consensus disorder prediction 178 251 - -
Pumo5g00743 251 SMART rrm1_1 41 114 IPR000504 GO:0003723
Pumo5g00743 251 MobiDBLite consensus disorder prediction 230 251 - -
Pumo5g00743 251 SUPERFAMILY RNA-binding domain, RBD 25 150 IPR035979 GO:0003676
Pumo5g00743 251 Gene3D - 33 155 IPR012677 -
Pumo5g00743 251 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 37 204 - -
Pumo5g00743 251 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 40 118 IPR000504 GO:0003723
Pumo5g00743 251 FunFam Glycine-rich RNA-binding protein 3 mitochondrial 21 140 - -
Pumo5g00743 251 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 42 112 IPR000504 GO:0003723
Pumo5g00743 251 PRINTS Eggshell protein signature 154 164 - -
Pumo5g00743 251 PRINTS Eggshell protein signature 126 141 - -
Pumo5g00743 251 PRINTS Eggshell protein signature 36 52 - -
Pumo5g00743 251 PRINTS Eggshell protein signature 179 197 - -
Pumo5g00743 251 MobiDBLite consensus disorder prediction 178 223 - -
Pumo5g00743 251 CDD RRM2_NsCP33_like 41 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00743 Pumo-Chr5 15013147 15016335 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g00743 42 155 Eukaryotic Initiation Factors Gene Family AT1G49760 30.709 9.59e-09 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g00743 K12741 - gmx:100807155 339.732