Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00740 ATGGAGCAAAGTCAGATCTTTACTCATGTGGTGATTTTGTTGCTTATGGTCCTAGTTGGAGCCAGTTGTGCTAAGGCAGAAGATGGAGGAGGAGAAGCAGCTGATAGGATTTTGGAACTCCCTGGTCAGCCAAAAGTGTCATTTCAGCAGTTCTCTGGCTATGTTACTGTCAACAAGGTTGCTGGTAGAGCCCTCTTTTACTGGCTCACTGAAGCTGCCCAAAATCCTCTCACCAAACCTTTGGTCATTTGGCTCAATGGAGGTCCAGGATGTTCATCAGTGGCATATGGAGCATCTGAAGAGATTGGCCCATTTAGAATAAACAAAACAGCTTCTGGGCTATACATTAACAAGTTCTCATGGAACACAGTGGCCAACCTCTTGTTCTTGGAAGCTCCGGCCGGGGTGGGCTTCTCCTACACCAACCGCTCCTCTGACCTTCTCGACACCGGCGACCGCCGCACCGCCCAAGACTCTCTGAAATTTGTTATCCAATGGCTAGAACGATTCCCACGTTACAAAAACCGGAAACTTTATATCACTGGAGAGAGCTATGCAGGCCATTATGTTCCTCAATTAGCCAAGGAAATCATGACCTATAACGCAAAAACCAAGCACCCCATCAATCTCAAAGGAATCATGGTAGGAAATGCAGTGACAGACAACTACTATGATAACTTGGGCACAGTGACGTATTGGTGGAGCCATGCTATGATCTCCGACCAGACTTACCGGCAACTCATGAGTACATGTGATTTTCACAGGCAGAAGGAATCTGATGAGTGTGAGTCTGTGTATAGCTATGCCATGGATCAAGAATTTGGTAACATTGATCAGTACAACATCTATGCTCCTCCATGCAACAACTCTGATGGTAGTAGTAGCTCTGCCACCCGCCGCACCATGCGCTTACCTCACCGACCCCATGTGGCTTTTAGGCATTGGTCTGGTTATGATCCATGTACGGAAAAGTATGCAGAGATTTACTACAACAGGCCTGATGTTCAGAAAGCACTCCATGCCAACAAAACCGGCATCCCTTATAGGTGGACTGCTTGCAGTGAGGTTTTGAATCGGAACTGGAATGATACAGATGTATCTGTTCTTCCAATTTATAGAGAGTTGATAGCTCACGGAATAAGAGTTTGGGTGTTCAGTGGGGACGTGGACTCAGTGGTGCCAGTCACAGCAACAAGATATGCCCTTGCACAGCTTAAGTTGTCAACTAAAATACCATGGTATCCTTGGTATGTCAAAAATCAGGTTGGAGGGTGGACAGAGGTGTATGAAGGGGTAACATTTGCGACTGTGAGAGGAGCAGGGCATGAAGTGCCGCTATTCAAGCCAAGAGCAGCACTTCAGTTATTCACATCATTCCTTGCAGGAAAGCCTCTTCCAAAGTCCTAA 1407 0.4662 MEQSQIFTHVVILLLMVLVGASCAKAEDGGGEAADRILELPGQPKVSFQQFSGYVTVNKVAGRALFYWLTEAAQNPLTKPLVIWLNGGPGCSSVAYGASEEIGPFRINKTASGLYINKFSWNTVANLLFLEAPAGVGFSYTNRSSDLLDTGDRRTAQDSLKFVIQWLERFPRYKNRKLYITGESYAGHYVPQLAKEIMTYNAKTKHPINLKGIMVGNAVTDNYYDNLGTVTYWWSHAMISDQTYRQLMSTCDFHRQKESDECESVYSYAMDQEFGNIDQYNIYAPPCNNSDGSSSSATRRTMRLPHRPHVAFRHWSGYDPCTEKYAEIYYNRPDVQKALHANKTGIPYRWTACSEVLNRNWNDTDVSVLPIYRELIAHGIRVWVFSGDVDSVVPVTATRYALAQLKLSTKIPWYPWYVKNQVGGWTEVYEGVTFATVRGAGHEVPLFKPRAALQLFTSFLAGKPLPKS 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00740 468 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 38 449 IPR001563 GO:0004185|GO:0006508
Pumo5g00740 468 Gene3D alpha/beta hydrolase 31 289 IPR029058 -
Pumo5g00740 468 Pfam Serine carboxypeptidase 42 461 IPR001563 GO:0004185|GO:0006508
Pumo5g00740 468 Gene3D - 321 358 - -
Pumo5g00740 468 ProSitePatterns Serine carboxypeptidases, histidine active site. 432 449 IPR033124 GO:0004185
Pumo5g00740 468 FunFam Carboxypeptidase 31 289 - -
Pumo5g00740 468 FunFam Carboxypeptidase 368 462 - -
Pumo5g00740 468 SUPERFAMILY alpha/beta-Hydrolases 33 466 IPR029058 -
Pumo5g00740 468 Gene3D - 368 462 - -
Pumo5g00740 468 ProSitePatterns Serine carboxypeptidases, serine active site. 180 187 IPR018202 GO:0004185
Pumo5g00740 468 FunFam Carboxypeptidase 317 465 - -
Pumo5g00740 468 PRINTS Carboxypeptidase C serine protease (S10) family signature 166 191 IPR001563 GO:0004185|GO:0006508
Pumo5g00740 468 PRINTS Carboxypeptidase C serine protease (S10) family signature 117 129 IPR001563 GO:0004185|GO:0006508
Pumo5g00740 468 PRINTS Carboxypeptidase C serine protease (S10) family signature 432 445 IPR001563 GO:0004185|GO:0006508
Pumo5g00740 468 PRINTS Carboxypeptidase C serine protease (S10) family signature 130 140 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00740 Pumo-Chr5 14987849 14994856 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g00740 326 465 Calmodulin-binding Proteins AT2G22960 31.206 3.57e-16 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g00740 K16297 - gmx:100807680 930.243