Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00739 ATGGAGTCATTGCCAATAGCACATGACAGGCTGGGAAAGGGGTTGGTTTACGCAATTCTTGTTGGAGAAAACAAGTTGGCAGGACCTTTTCCTACTAATTTATTCGAGAAATGTGATGGGTTAAATGCATTGCTTTTAAATGTGAGTTATACTATGTTATCCGGTCAGATTCCTTCCAAGTTTGGTGGAATGTGCAGGTCATTGAAATTCTTGGATGCATCTGGTAATCAGATTACTGGGCCAATCCCCTTAGGTTTGGGGGATATGGTCTCTCTTGTTTCTCTGAACCTAAGTTGGAACCATTTACAAGGTCAGATTCCCGTCAGCCTTGGCCAGTTGAAGGATCTGAAGTTTCTCTCTTTGGCTGGTAATAACTTAACTGGTTCCATCCCTACCAGCTTGGGGCAGTTGTACTCTTTAGAAGTCCTAGACCTTTCTTCAAATTCTCTTACAGGTGAAATTCCAAAAGGTATTGAGAACTTGAGAAACCTGACTGATCTTTTGCTTAACAATAACAAACTTTCTGGACAGATTCCTGCTGGTTTGGCAAATGTCAGTACACTGTCAGCATTTAATGTGTCATTCAATAACTTATCTGGATCCTTGCCTTCAAATGGTAACTCAATAAAATGCAGCAGTGCTGTTGGGAATCCATTTTTACGTTCTTGCAATGAAGTTTCTCTTACTGTGCCATCATCAGACCAAGGGCTGGTTGATAATTCTAGTTCTTATACTGCTGCACCACCAGAAGTTACGGGCAAAAAGGGTGGGAATGGTTTCAATTCTATTGAAATAGCATCTATAACTTCTGCATCAGCTATTGTTTCTGTTCTTCTGGCCCTAATCATCCTTTTTATTTATACACGGAAGTGGAACCCTAGGTCCAGGGTTGTTGGGTCTACTAGAAAAGAAGTTACAGTGTTCACTGATATTGGGGTTCCATTGACATTTGAAAATGTTGTCCGTGCCACAGGAAATTTCAATGCTAGCAACTGCATTGGGAATGGGGGATTTGGGGCAACTTATAAGGCAGAGATAGTACCAGGAAACTTGGTGGCAATAAAACGTCTATCAGTTGGACGATTCCAAGGTGTTCAACAATTCCATGCAGAGATTAAGACCCTTGGAAGGCTTCGTCATCCAAATCTTGTCACACTGATTGGTTATCATGCCTGTGAGACTGAGATGTTTCTCATATACAACTATTTGCCAGGTGGTAATCTGGAAAAGTTTATCCAAGAGAGGTCCACAAGGGCTGTGGATTGGAGGATTCTTCACAAGATTGCATTGGATATAGCCCGTGCACTTGCATACCTGCATGATCATTATGGTGTGGTGCTTCTGGAGTTACTCTCTGACAAGAAGGCATTGGATCCTTCATTTTCATCATATGGAAATGGTTTCAACATAGTAGCATGGGCATGCATGCTACTGCGGCAAGGCCAGGCAAAAGATTTCTTCGCTGCCGGCTTATGGGATGCAGGACCTGCAGATGATTTGGTAGAGGTCCTACACTTGGCTGTTGTGTGTACGGTGGTTTTTGGGGGGGTGGGGGAAACCATGTCTGCCGAGTCCCAGCAGGCACTGATGCTAAAATGCTCGAAGCTTATATGTAAATTCGGCTTTTGTGGCCAACGCTAA 1641 0.4302 MESLPIAHDRLGKGLVYAILVGENKLAGPFPTNLFEKCDGLNALLLNVSYTMLSGQIPSKFGGMCRSLKFLDASGNQITGPIPLGLGDMVSLVSLNLSWNHLQGQIPVSLGQLKDLKFLSLAGNNLTGSIPTSLGQLYSLEVLDLSSNSLTGEIPKGIENLRNLTDLLLNNNKLSGQIPAGLANVSTLSAFNVSFNNLSGSLPSNGNSIKCSSAVGNPFLRSCNEVSLTVPSSDQGLVDNSSSYTAAPPEVTGKKGGNGFNSIEIASITSASAIVSVLLALIILFIYTRKWNPRSRVVGSTRKEVTVFTDIGVPLTFENVVRATGNFNASNCIGNGGFGATYKAEIVPGNLVAIKRLSVGRFQGVQQFHAEIKTLGRLRHPNLVTLIGYHACETEMFLIYNYLPGGNLEKFIQERSTRAVDWRILHKIALDIARALAYLHDHYGVVLLELLSDKKALDPSFSSYGNGFNIVAWACMLLRQGQAKDFFAAGLWDAGPADDLVEVLHLAVVCTVVFGGVGETMSAESQQALMLKCSKLICKFGFCGQR 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00739 546 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 291 402 - -
Pumo5g00739 546 Pfam Leucine rich repeat 116 174 IPR001611 GO:0005515
Pumo5g00739 546 Pfam Protein tyrosine and serine/threonine kinase 330 442 IPR001245 GO:0004672|GO:0006468
Pumo5g00739 546 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 1 228 - -
Pumo5g00739 546 ProSitePatterns Protein kinases ATP-binding region signature. 333 355 IPR017441 GO:0005524
Pumo5g00739 546 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 20 442 - -
Pumo5g00739 546 SMART LRR_typ_2 137 160 IPR003591 -
Pumo5g00739 546 SMART LRR_typ_2 89 113 IPR003591 -
Pumo5g00739 546 SMART LRR_typ_2 161 184 IPR003591 -
Pumo5g00739 546 ProSiteProfiles Protein kinase domain profile. 327 546 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g00739 546 Gene3D Ribonuclease Inhibitor 8 239 IPR032675 -
Pumo5g00739 546 Gene3D Transferase(Phosphotransferase) domain 1 400 453 - -
Pumo5g00739 546 SUPERFAMILY L domain-like 24 225 - -
Pumo5g00739 546 SUPERFAMILY Protein kinase-like (PK-like) 309 442 IPR011009 -
Pumo5g00739 546 Gene3D Phosphorylase Kinase; domain 1 290 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00739 Pumo-Chr5 14948763 14952442 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g00739 1 512 Receptor kinase-like Gene Family AT3G02130 60.204 0.0 601
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XV Pumo5g00739 PK_Tyr_Ser-Thr 4.6e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g00739 - - gmx:100803058 793.112