Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00723 ATGGTACCGTGGAACAGAATTTTGAAAATCTTAAAGTGGAAGGACAAAACTCTGCACCTAGCAACCCACAATGAGAGACATAAGATCATGATTAAGAGCCCAAAAGAAGCAGATTTTCCACTAAAACAGGAGGGTCATTCTCAATCAATTAGTGATCCTGAAAAAGCAAAGGCTTCATCAAGCTCAGCAGCACAATGGCCAAGATTGAAGGATCCAAGGATTATTAGAGTATCTAGAGCCTTTGGAGGAAAAGACAGGCACAGCAAGGTTTTCACAATAAGAGGGTTAAGAGACAGACGGGTGAGGCTATCAGTACCAACTGCCATCCAACTCTATGATCTTCAAGATAGGCTAGGGCTCAGTCAACCAAGCAAGGTTGTTGATTGGTTGCTCAATGCAGCTAAGCATGAAATTGATGAACTTCCACCACTCCCCATTATTCCTTCAGTCAATAACTTCACCCTTGGTTATCCATCTGCTGTTACTTCTAATGAAGCTACCACCTCTCATTCTCAGCCTGATGAACAATTGCTTAATATCAATAGGAGCACTCAGTGGGAAGGTTCAAGCTGGAAATTAAAGCCTAAAGAAGTTTCAGGAGAAATGGTTAGCACTGATAAAGCAAATTGGATAAGTAGAAGTGAAGAGGATAAGCAAGGAAGCAATAATAATGATGGTCCTAGCACACATGTTATACCAAATAATCTCCTACCAAGAGCAAATCACCCTTCATTCTTGGGCCTGCTAAATACTATGCCACAAGGTTACCAATGGGAACCTTCTGCTGGTGATGTTTCTCATCAGTTGGGAAACAATGGATTTTCAAACCAAACAGACATACACAGCATTAACGTTGTACCTTTCCCAACATCAACATTGTCTCTATCAACTGGGAATTCTCAAATTCTGCTATGTCCTCCAGGAGCAACACAGCCATATTTCCCTTCACATGTTACAGCAATGGACATGGATCCGAGACAAATCAACCACTATCAGATGTTGAGTTCAGGTTCTCAAAATCCATTGGCGAATTCTCTCAACCATTCTTTCAGCTTGGCCATGATGACTCATAAACCTCTCCATTCACCCAACAGCAGCAAAAGCCCATCCCACAAAGACCAAGATTTCCCTTCCAAGTGA 1140 0.4184 MVPWNRILKILKWKDKTLHLATHNERHKIMIKSPKEADFPLKQEGHSQSISDPEKAKASSSSAAQWPRLKDPRIIRVSRAFGGKDRHSKVFTIRGLRDRRVRLSVPTAIQLYDLQDRLGLSQPSKVVDWLLNAAKHEIDELPPLPIIPSVNNFTLGYPSAVTSNEATTSHSQPDEQLLNINRSTQWEGSSWKLKPKEVSGEMVSTDKANWISRSEEDKQGSNNNDGPSTHVIPNNLLPRANHPSFLGLLNTMPQGYQWEPSAGDVSHQLGNNGFSNQTDIHSINVVPFPTSTLSLSTGNSQILLCPPGATQPYFPSHVTAMDMDPRQINHYQMLSSGSQNPLANSLNHSFSLAMMTHKPLHSPNSSKSPSHKDQDFPSK 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00723 379 MobiDBLite consensus disorder prediction 357 371 - -
Pumo5g00723 379 MobiDBLite consensus disorder prediction 44 66 - -
Pumo5g00723 379 MobiDBLite consensus disorder prediction 41 66 - -
Pumo5g00723 379 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 41 334 IPR005333 GO:0003700
Pumo5g00723 379 ProSiteProfiles TCP domain profile. 83 141 IPR017887 -
Pumo5g00723 379 MobiDBLite consensus disorder prediction 357 379 - -
Pumo5g00723 379 MobiDBLite consensus disorder prediction 194 237 - -
Pumo5g00723 379 MobiDBLite consensus disorder prediction 221 235 - -
Pumo5g00723 379 Pfam TCP family transcription factor 83 185 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00723 Pumo-Chr5 14725636 14727867 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g00723 8 333 TCP Transcription Factor Family AT3G02150 38.012 5.83e-48 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Pumo5g00723 TCP 9.2e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g00723 - - gmx:100816424 667.151