Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00690 ATGTACCGGTTGAACGTTGCGGGAGCATCAATCCTCCCCTCATGGGACACGGCTTCCTGTTTATTCTGGCTTCTTCTACTTCTAAGGTTACACTTTTGTCAGCTTAACCCGGAGGTTCAGGAGCCTGGTGACCAGATATTCTCCATCTTCATTCAGGATCAGTTGGCAGAAGAAGGGGCAGACATTTTCAAGTGGAGCGACAACCAGAAGGGTGTACCAGTGGTTAAAGACTACGCAGTTTTCATCCCAGGGAATCGGAAAAAGGTATATCTTTCACTGGAAATGCATCCTCACCCTAAAAGCTTGATCAAGGACGCACAACTAAACGCAATTGAACTCTTCAAAATGACGGACTCAGCAGGTAATCTCGCTGGACCGAACCCAGAAAACAAGAACAGAGGCGGCACCACAAGAACCCTCGCCGCGGTCGCAGGTGCAGTTTTCGTTGTCGTTTTGCTCTTCTTTATTGTCTCTTTCTTCCTTATGAAACTTAAGAAGAACGTCCCGGTCGACAAGGGTTCCAATAAAAAAGACGAAACTTCTCTTGGATGTGCCTCATCATCACTACCAACCAGCTTCTGTCACCACTTCTCAATCAAAGAAATCAAAGTTGCCACCAATAAATTCGACGAAGTCTTCCTGGTTGGCGTAGGAGGCTTCGGCAACGTGTACAAAGGCTACATCGACGACGATTCAACATGTGTTGCAATCAAAAGGCTCAAACCGGGTTCTCGGCAAGGTATGCACGAGTTCGTAAACGAGATTGAAATGCTCTCTCAACTTCGTCATCTCAATCTTGTTACCCTCATTGGTTATTGTTATGAGAGCAACGAGATGATACTCGTTTACGAATTCATGGATAGCGGAACCCTATGTGACCATCTCTATGACACTGATGACCCGTCTCTGTCGTGGAAGAAAAGGCTCCAAATCTGCATAGGAGTTTCCCGAGGATTGCATTATCTGCATATAGATGCGAAACAGGTGATCATTCATCGAGACGTGAAGAGCACCAATATCTTGTTGGATGAGAAATGGGTAGCGAAGGTTTCAGATTTTGGGTTAGCTAGAATTGGGTCCACAAGTATTTCAACAACCCATGTGAACACTCAGGTGAAAGGTAGTATTGGATACTTAGACCCAGAGTATTACAAACGACAGCGTTTGACAGAGAAGTATGACGTGTACTCGTTTAGGGTGGTGCTCTTGGAAGTATTATCAGGGAGACAGCCTTTGCTCCATTGGGAGGAGAAGCAACGAATGTCACTTGTTAATTGGGCGAAGCGTTGTTATGAGAAGGGAACTCTCAGAGAGATTGTGGATCCAGAACTGAAAGGCCAGATAGCACCTGAGTGTTTGCGCAAATTTAGTGAGGTTGCGTTGAGTTGTTTGCTTGAGGATGGGACTCAGTGGCCTTCCATGAACGACATCGTTGGGGTGTTGGAATTTGTTTTGGAGCTCCAGGATAGTATTGTTGTTAATGGAGTGGTAGAGTGTTGGGAATTATGCAGCTCGATTGAGTATGATGAGCGATGGAGACGGTAG 1545 0.4576 MYRLNVAGASILPSWDTASCLFWLLLLLRLHFCQLNPEVQEPGDQIFSIFIQDQLAEEGADIFKWSDNQKGVPVVKDYAVFIPGNRKKVYLSLEMHPHPKSLIKDAQLNAIELFKMTDSAGNLAGPNPENKNRGGTTRTLAAVAGAVFVVVLLFFIVSFFLMKLKKNVPVDKGSNKKDETSLGCASSSLPTSFCHHFSIKEIKVATNKFDEVFLVGVGGFGNVYKGYIDDDSTCVAIKRLKPGSRQGMHEFVNEIEMLSQLRHLNLVTLIGYCYESNEMILVYEFMDSGTLCDHLYDTDDPSLSWKKRLQICIGVSRGLHYLHIDAKQVIIHRDVKSTNILLDEKWVAKVSDFGLARIGSTSISTTHVNTQVKGSIGYLDPEYYKRQRLTEKYDVYSFRVVLLEVLSGRQPLLHWEEKQRMSLVNWAKRCYEKGTLREIVDPELKGQIAPECLRKFSEVALSCLLEDGTQWPSMNDIVGVLEFVLELQDSIVVNGVVECWELCSSIEYDERWRR 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00690 514 CDD STKc_IRAK 215 482 - -
Pumo5g00690 514 FunFam Receptor-like protein kinase FERONIA 286 499 - -
Pumo5g00690 514 FunFam receptor-like protein kinase FERONIA 171 285 - -
Pumo5g00690 514 Gene3D Phosphorylase Kinase; domain 1 194 285 - -
Pumo5g00690 514 ProSitePatterns Protein kinases ATP-binding region signature. 215 238 IPR017441 GO:0005524
Pumo5g00690 514 Gene3D - 26 118 - -
Pumo5g00690 514 ProSitePatterns Serine/Threonine protein kinases active-site signature. 330 342 IPR008271 GO:0004672|GO:0006468
Pumo5g00690 514 SUPERFAMILY Protein kinase-like (PK-like) 185 484 IPR011009 -
Pumo5g00690 514 PANTHER OS07G0166700 PROTEIN 193 488 IPR045272 GO:0004714|GO:0006468
Pumo5g00690 514 Pfam Protein tyrosine and serine/threonine kinase 215 477 IPR001245 GO:0004672|GO:0006468
Pumo5g00690 514 ProSiteProfiles Protein kinase domain profile. 209 484 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g00690 514 SMART serkin_6 209 484 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g00690 514 Gene3D Transferase(Phosphotransferase) domain 1 286 495 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00690 Pumo-Chr5 13489835 13491561 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g00690 27 510 Receptor kinase-like Gene Family AT3G51550 48.375 1.40e-157 469
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Pumo5g00690 PK_Tyr_Ser-Thr 5.6e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g00690 - - gmx:113000103 672.544