Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00685 ATGGCCCAGTCCTTCGGTCAGACCGAGATCAACTGGGACAAGCTAGATAAGACTAGGTTCTATGTCGTAGGAGCTGGACTCTTTACAGGTGTTTCGGTGGCACTTTATCCCGTTTCTGTTGTGAAAACTAGGCTGCAGGTTGCCACAACGAATGCTGTAGAAAGAAATGTGTTTTCTGTTGCAAAAGGACTACTTAAAACTGATGGCATCCCTGGTTTGTATAGAGGTTTTGGCACAGTTATCACTGGTGCAATTCCTGCCAGAATCATATTCCTCTCCACTCTAGAGACCACAAAGGTGGCTGCCTTCAGAATGCTTGAACCGTTTAGACTATCTGAAACAACCCAAGCTGCCATTGCAAATGGAGTTGCAGGCATGACATCATCGCTTTTTGCTCAATCTGTGTTTGTACCAATTGATGTGGTTAGCCAAAAGTTGATGGTGCAAGGATACTCAGGCCATGCCCAATATAGTGGGGGTCTGGATGTTGCTCGCAAGGTTGTAAGGTCTGATGGCATCCGGGGACTGTATCGAGGGTTTGGTCTGTCTGTTATTACTTATGCACCTGCCAGTGCAGTATGGTGGGCAAGTTACGGTTCAAGCCAACGCTTCATTTGGAGATTCCTGGACCAAGGTGCCAAATATGATGAAGTTGCTCCTAGTCTGCAGAAAATTATGTTAGTTCAGGCTACTGGAGGGATTATTGCTGGTGCAACTTCATCCTGCATTACAACCCCATTGGATACTATCAAGACACGATTACAGGTAATGGGACATGAAAATAGAAGCTCTATAAAACAAGTTGCTAAAGATTTAATCAGTGAAGATGGTTGGAGAGGCTTTTATAGAGGGTTTGGTCCTAGATTTTTTAGCATGTCAGCATGGGGCACTTCAATGATATTGACTTATGAGTATCTGAAACGCGTATGCTCAAAAGATGAATAG 945 0.4423 MAQSFGQTEINWDKLDKTRFYVVGAGLFTGVSVALYPVSVVKTRLQVATTNAVERNVFSVAKGLLKTDGIPGLYRGFGTVITGAIPARIIFLSTLETTKVAAFRMLEPFRLSETTQAAIANGVAGMTSSLFAQSVFVPIDVVSQKLMVQGYSGHAQYSGGLDVARKVVRSDGIRGLYRGFGLSVITYAPASAVWWASYGSSQRFIWRFLDQGAKYDEVAPSLQKIMLVQATGGIIAGATSSCITTPLDTIKTRLQVMGHENRSSIKQVAKDLISEDGWRGFYRGFGPRFFSMSAWGTSMILTYEYLKRVCSKDE 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00685 314 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 3 313 - -
Pumo5g00685 314 Pfam Mitochondrial carrier protein 27 100 IPR018108 -
Pumo5g00685 314 Pfam Mitochondrial carrier protein 119 205 IPR018108 -
Pumo5g00685 314 Pfam Mitochondrial carrier protein 228 313 IPR018108 -
Pumo5g00685 314 ProSiteProfiles Solute carrier (Solcar) repeat profile. 224 309 IPR018108 -
Pumo5g00685 314 Gene3D Mitochondrial carrier domain 21 314 IPR023395 -
Pumo5g00685 314 ProSiteProfiles Solute carrier (Solcar) repeat profile. 17 101 IPR018108 -
Pumo5g00685 314 SUPERFAMILY Mitochondrial carrier 13 306 IPR023395 -
Pumo5g00685 314 ProSiteProfiles Solute carrier (Solcar) repeat profile. 116 204 IPR018108 -
Pumo5g00685 314 FunFam Mitochondrial substrate carrier family protein 21 313 - -
Pumo5g00685 314 PRINTS Mitochondrial carrier protein signature 177 195 IPR002067 GO:0055085
Pumo5g00685 314 PRINTS Mitochondrial carrier protein signature 33 47 IPR002067 GO:0055085
Pumo5g00685 314 PRINTS Mitochondrial carrier protein signature 233 255 IPR002067 GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00685 Pumo-Chr5 13369787 13375355 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g00685 10 314 Chloroplast and Mitochondria Gene Families AT5G15640 74.919 3.75e-172 478
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g00685 K15121 - gmx:100782750 592.038
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g00685 5 13369787 13375355 Pumo5g00685 5 13369787 13375355 ECH
Pumo2g02397 2 51863907 51868825 Pumo5g00685 5 13369787 13375355 PCT