Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00677 ATGGAATCTATGATGGGTTCCCTAACAATCGAGAAAGAGTGGAGGAAAGGCCCTTGGACTGGTGAAGAGGACAAGTTGCTAAGTGAATATGTTAGCTTGCATGGGGAGGGTAGGTGGAGCTCGGTGGCCAAGTGTACAGGATTAAAAAGAAATGGCAAAAGCTGCAGATTAAGATGGGTAAATTATTTGAGACCCGGCCTCAAGAAAGGTCAATTAACACCTCTAGAAGCAGGAACCATTATTGAACTACATGCAATTTTTGGAAACAAGTGGTCTACAATAGCAAAGTACTTGCCAGGAAGAACTGATAACGAGATTAAGAACTACTGGAGAACTCACTTCGGGAAGATTTTGAAATCCAAGCACAAGAAGCTAGAAATTCAAAAGGCAAAGGTGCTAAAACAGTTGAAAGAAAAGCAACAACCTCAAGAGTATGATATCAAAAGCATTGGGTCTCATGATGACCAGACCAAAAATGAAACAAAATCCTTTGAGACACAAAATAATAAGCAACAAGAAATGGGTTTCATGTATCCAACAATAGAGCACCAATATACCGTTCCTTCAATGCATGAGGGATTCTCATCCACGTGGCCAGACACAGTAGCGGATGATGGCTCATGGTTTAGTTTATGGGACTTGGATGAACCACAAAGTTTTGCAGATTATGAACGTGTCGTGCCAAATCAAGGAGTTGGAGGGGATTCCATGCAAAATCATGATAAATCTTTTTGTTTTGATGATACATACGAAAACCTCTTCTACAGAAAAGACATGTTTGGGTGA 786 0.4046 MESMMGSLTIEKEWRKGPWTGEEDKLLSEYVSLHGEGRWSSVAKCTGLKRNGKSCRLRWVNYLRPGLKKGQLTPLEAGTIIELHAIFGNKWSTIAKYLPGRTDNEIKNYWRTHFGKILKSKHKKLEIQKAKVLKQLKEKQQPQEYDIKSIGSHDDQTKNETKSFETQNNKQQEMGFMYPTIEHQYTVPSMHEGFSSTWPDTVADDGSWFSLWDLDEPQSFADYERVVPNQGVGGDSMQNHDKSFCFDDTYENLFYRKDMFG 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00677 261 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 67 IPR017930 -
Pumo5g00677 261 SMART sant 15 65 IPR001005 -
Pumo5g00677 261 SMART sant 68 116 IPR001005 -
Pumo5g00677 261 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Pumo5g00677 261 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 68 118 IPR017930 -
Pumo5g00677 261 Gene3D - 72 174 - -
Pumo5g00677 261 CDD SANT 80 114 IPR001005 -
Pumo5g00677 261 SUPERFAMILY Homeodomain-like 14 110 IPR009057 -
Pumo5g00677 261 CDD SANT 18 63 IPR001005 -
Pumo5g00677 261 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Pumo5g00677 261 Pfam Myb-like DNA-binding domain 71 113 IPR001005 -
Pumo5g00677 261 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Pumo5g00677 261 FunFam Myb transcription factor 16 68 - -
Pumo5g00677 261 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 11 180 IPR044676 GO:0003700|GO:0006355|GO:0043565
Pumo5g00677 261 Gene3D - 16 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00677 Pumo-Chr5 13193154 13195127 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g00677 15 244 MYB Transcription Factor Family AT3G30210 47.410 9.54e-67 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo5g00677 Myb_DNA-binding 3.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g00677 K09422 - gmx:100817474 414.846