Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00670 ATGGGTTCAGTTTGTTGCTGTTTCAATGTTGATGATTTTGACGATTATATGAATCCAAATAGTTCTGTATATAGGAATTGTATGTGTCTCAGTTGCGTGGTACAGAACTTTTTGACTGTGTATACATCAATATTCCGTAGAGGGGAAGTGCATGCGATTCCTTCATCTATACAGGGCGCAGCATCTATGACTTCTACAGCTTCACTTGATAATTCTCTATCTGACATGTACCGTTCTCCTCCAAGGCCCTTGCCTTATGATGCAGACCCCAGGTTTTTCCGTTCACAGCGTGATGGACTAGTGTCAAGACGTGAGAAGGGTTCAAGTCATTTGAATGAAGAGTCAGAACCTCTAAGAGGTGATGTAGATGCTGACTCAGAATCTTTAAATTCGGGTGGTAAATGGAATGATACCAGTGAAGATGGATCAAAGGAATACCGTTCTAAGTCCTCTGTAAGACTCTCATCAGCAAAACTTACAACTGGAGCTGGGATTGTCTATTCATCATCAGAAGAGGAGGATTTCTGTCCAACTTGTCTTGAAGAATACACTGAAGAGAATCCGAAGATAGTGACAAAATGCTCTCATCATTTTCATCTTGGTTGCATTTTTGAGTGGATGGAAAGAAGTGACAACTGTCCCTGTTTGTGGGAAGGTGATGGTATTTGA 669 0.4111 MGSVCCCFNVDDFDDYMNPNSSVYRNCMCLSCVVQNFLTVYTSIFRRGEVHAIPSSIQGAASMTSTASLDNSLSDMYRSPPRPLPYDADPRFFRSQRDGLVSRREKGSSHLNEESEPLRGDVDADSESLNSGGKWNDTSEDGSKEYRSKSSVRLSSAKLTTGAGIVYSSSEEEDFCPTCLEEYTEENPKIVTKCSHHFHLGCIFEWMERSDNCPCLWEGDGI 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00670 222 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 134 218 IPR013083 -
Pumo5g00670 222 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 57 217 - -
Pumo5g00670 222 MobiDBLite consensus disorder prediction 99 151 - -
Pumo5g00670 222 MobiDBLite consensus disorder prediction 99 123 - -
Pumo5g00670 222 SUPERFAMILY RING/U-box 171 214 - -
Pumo5g00670 222 Pfam RING-H2 zinc finger domain 171 214 IPR024766 GO:0008270
Pumo5g00670 222 ProSiteProfiles Zinc finger RING-type profile. 176 214 IPR001841 -
Pumo5g00670 222 MobiDBLite consensus disorder prediction 72 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00670 Pumo-Chr5 13112565 13117779 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g00670 1 214 C3H Transcription Factor Family AT5G15790 57.727 2.55e-88 258
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g00670 - - gmx:100788192 428.328
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g00670 5 13112565 13117779 Pumo5g00670 5 13112565 13117779 ECH