Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00659 ATGGCTAGGTCTGCGAAAGGGCATCAAGATGAATTGGAGGACGATGATGAAGAAGAACTCTTAACTGCAAACACCTCTTCCTCTCTCAGCAAAGTGAAGGTGGATGAACCCAGCACGGGGAAGAGGGTGAACCCACATCGTTCAAAGCATTCAGAAACTGAGCAACGTAGAAGGAGCAAGATTAACGAAAGGTTTCAAGTTCTGAGAGATCTCATACCTCAAAATGATCAAAAAAGAGATAAGGCATCCTTCTTGTTGGAGGTTATTGAGTACATTCAGTTCCTACAGGAAAAATTACAAATTTATGAACAGACTTATGAAGGATGGAATCAGGAGCCAACGAAATTAACTCCATGGAGAAATCATCACGGGCCTACAGAAAATACTACAGATCCTTCTCAAGCTACACAAAATGGGTCTGTTGATGAGAAAAATAACAATGTCTCTCCATTGTTGCCCAAAAATATACAGAACCCGATAGAGTCTGACTTCTCAATGACAACTATTCAGAAGGGCCACACCCCTGGTTCAACTACAGAAGCAGTTCCCCTGCCCATGCAAATGCGATTGGACATGTTTGATCCCGTTGTTAGCAGTGGTATGGCAGCCCAACATCTGCAGGAACCTGTATCTAATGTTAACATGCCTTCCCATACTCAACCTCAATTGTGGCTTAATAAACCAAACAAGGGCAACTATATTCTTCCACATAATGATACAATGAAGGAACAAGAGGAGCTGGTGATTGAAAGTGGATCAGATAGAATCTCAAGTGCCTATTCTCAGGGAATTTTAGATTCTCTCACGCAAGCACTGCACTCTTCGGGCATAGATATGTCCCAGACTAATGTCTCGGTGCAAATTGATGTTGGTAGAAGAGCAAATGCTGGGTTGATCCCCTCTGCATGTACTTCAAAGGGTCATGAAAACCAATTTGTGAGCAACCCAGCAATAGCACGTTCCGGAGTTGATTACTGCAACATTGATTCTGAACAAAGTTCAAAGAGGCTCAGACAAGAAGCAAGCTAG 1029 0.4276 MARSAKGHQDELEDDDEEELLTANTSSSLSKVKVDEPSTGKRVNPHRSKHSETEQRRRSKINERFQVLRDLIPQNDQKRDKASFLLEVIEYIQFLQEKLQIYEQTYEGWNQEPTKLTPWRNHHGPTENTTDPSQATQNGSVDEKNNNVSPLLPKNIQNPIESDFSMTTIQKGHTPGSTTEAVPLPMQMRLDMFDPVVSSGMAAQHLQEPVSNVNMPSHTQPQLWLNKPNKGNYILPHNDTMKEQEELVIESGSDRISSAYSQGILDSLTQALHSSGIDMSQTNVSVQIDVGRRANAGLIPSACTSKGHENQFVSNPAIARSGVDYCNIDSEQSSKRLRQEAS 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00659 342 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 46 124 IPR036638 GO:0046983
Pumo5g00659 342 MobiDBLite consensus disorder prediction 112 157 - -
Pumo5g00659 342 MobiDBLite consensus disorder prediction 35 61 - -
Pumo5g00659 342 Pfam Helix-loop-helix DNA-binding domain 47 96 IPR011598 GO:0046983
Pumo5g00659 342 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 45 95 IPR011598 GO:0046983
Pumo5g00659 342 SMART finulus 51 101 IPR011598 GO:0046983
Pumo5g00659 342 FunFam BHLH domain class transcription factor 43 115 - -
Pumo5g00659 342 Gene3D - 44 117 IPR036638 GO:0046983
Pumo5g00659 342 MobiDBLite consensus disorder prediction 1 61 - -
Pumo5g00659 342 Coils Coil 92 112 - -
Pumo5g00659 342 CDD bHLH_AtBIM_like 47 120 - -
Pumo5g00659 342 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 1 339 IPR044295 GO:0003700|GO:0006351|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00659 Pumo-Chr5 12841913 12846153 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g00659 3 306 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G69010 41.830 5.68e-61 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo5g00659 HLH 1.6e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g00659 - - gmx:100791730 635.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g00659 5 12841913 12846153 Pumo5g00659 5 12841913 12846153 ECH