Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00656 ATGATGCCTACAGGAGAGTTGGTAGCTGTGAAGATGCTTGCACCCAATTCCAAACAAGGGGAGAAAGAATTTCAAACAGAGGTGCTTCTGCTAGGAAGACTGCATCATCGGAATCTTGTAAATTTGTTAGGATATTGCATAGATAAAGGACAGCATATGCTGGTTTACGAGTTCATGAGTAATGGAAGTTTAGAAAACCTTTTATATGGTGAAGAAAAGGAATTGAGTTGGGATGAAAGGCTGCAAATTGCTATTGATATTTCACACGGAATAGAATACCTTCATGAAGGGGCAGTCCCACCCGTCGTACATCGCGATTTGAAATCTGCTAATATATTGCTAGATCACTCAATGAGAGCTAAGGTTTCTGATTTTGGGCTCTCAAAGGAAGAGGTCTTTGATGGCCGTAATTCTGGCCTTAAAGGTACATATGGCTACATGGACCCAGCATACATTTCCTCAAGCAAGTTCACAGTGAAGAGTGACATTTACAGTTTTGGTATAATAATTTTTGAGCTCATCACTGCCATCCACCCACATCAAAATTTGATGGAATATATCCACCTTGCTGCAATGGATTATGATGGTGTAGATGGAATTCTTGACAAACAACTTGTGGGAAAATGCAATCTTGAAGAAGTGAGACAGCTTGCTAAAATTGCACACAAATGTTTGCACAAATCACCTAGGAAACGCCCCTCCATAGGTGAGGTTTCGCAGGGTATATTGAGGATCAAGCAAAGGCGCCTCATGAAAGAAGACACCATGTCATTTGCAAGCAGCAACTTCTCCCGAAGTGTGAGTAAAATAGAGGAGCAACAGATTGAATTAAGTAGAATAACCACCATGAACCGCAGAGAAATGGGGTGA 870 0.4115 MMPTGELVAVKMLAPNSKQGEKEFQTEVLLLGRLHHRNLVNLLGYCIDKGQHMLVYEFMSNGSLENLLYGEEKELSWDERLQIAIDISHGIEYLHEGAVPPVVHRDLKSANILLDHSMRAKVSDFGLSKEEVFDGRNSGLKGTYGYMDPAYISSSKFTVKSDIYSFGIIIFELITAIHPHQNLMEYIHLAAMDYDGVDGILDKQLVGKCNLEEVRQLAKIAHKCLHKSPRKRPSIGEVSQGILRIKQRRLMKEDTMSFASSNFSRSVSKIEEQQIELSRITTMNRREMG 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00656 289 ProSitePatterns Serine/Threonine protein kinases active-site signature. 102 114 IPR008271 GO:0004672|GO:0006468
Pumo5g00656 289 ProSiteProfiles Protein kinase domain profile. 1 243 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g00656 289 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 2 253 - -
Pumo5g00656 289 SUPERFAMILY Protein kinase-like (PK-like) 3 239 IPR011009 -
Pumo5g00656 289 FunFam Calcium/calmodulin-regulated receptor-like kinase 2 59 266 - -
Pumo5g00656 289 Gene3D Phosphorylase Kinase; domain 1 1 59 - -
Pumo5g00656 289 SMART serkin_6 4 251 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g00656 289 Gene3D Transferase(Phosphotransferase) domain 1 60 267 - -
Pumo5g00656 289 Pfam Protein tyrosine and serine/threonine kinase 7 239 IPR001245 GO:0004672|GO:0006468
Pumo5g00656 289 PIRSF ILK 3 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00656 Pumo-Chr5 12818498 12820801 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g00656 1 269 Receptor kinase-like Gene Family AT5G49780 40.071 2.84e-61 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-2 Pumo5g00656 PK_Tyr_Ser-Thr 4.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g00656 - - gmx:100794239 555.444