Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00642 ATGCAGGCCAGGGAGATCACAGAACTCAATTATTTACTCCCTTCAGACCCTTGTCCTTACCCAGGTCACTACAGCATGGTTCAGAACACCATCCCCACATTTCAACTCCACAAACTCTCAAACCAATTCTATGGCTTCCAGAACCCTCCTCAAGTGGTTGCAGACTTCAGCCCCACTCAGTCCTCATGCATCAGCAGCAACTCAACCTCTGATGAAGCAGATGAGCAACAGCAAAGTCTCATCAATGAGAGGAAGCACAGGAGGATGATATCGAACCGCGAGTCGGCGCGCCGGTCACGCATGAGGAAGCAGAAGCACCTTGATGAACTGTGGTCACAGGTGGTTTGGCTCAGGAATGAAAATCACCAGCTAATGGACAAGCTGAACCATACGTCTGAGTCACATGATAAAGTTGTTCAAGAGAATGTTCAGCTGAGAGAAGAAGCCTCAGAACTTCGCCAAATGATATGTGACATGCAGCTACACAGTCCATACCACCCTCCTCCCTTGAGCCCCATTGATGATGATGTCTCTCCCTATGTCAAATCTGATTCCTCAATCACAACAAGCTCTTTTGACCTGCTTGGTTGA 591 0.4822 MQAREITELNYLLPSDPCPYPGHYSMVQNTIPTFQLHKLSNQFYGFQNPPQVVADFSPTQSSCISSNSTSDEADEQQQSLINERKHRRMISNRESARRSRMRKQKHLDELWSQVVWLRNENHQLMDKLNHTSESHDKVVQENVQLREEASELRQMICDMQLHSPYHPPPLSPIDDDVSPYVKSDSSITTSSFDLLG 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00642 196 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 87 102 IPR004827 GO:0003700|GO:0006355
Pumo5g00642 196 SMART brlzneu 80 144 IPR004827 GO:0003700|GO:0006355
Pumo5g00642 196 SUPERFAMILY Leucine zipper domain 84 133 IPR046347 GO:0003700|GO:0006355
Pumo5g00642 196 PANTHER BASIC LEUCINE ZIPPER 43-RELATED 9 166 IPR044521 -
Pumo5g00642 196 MobiDBLite consensus disorder prediction 56 76 - -
Pumo5g00642 196 Pfam bZIP transcription factor 84 136 IPR004827 GO:0003700|GO:0006355
Pumo5g00642 196 MobiDBLite consensus disorder prediction 56 80 - -
Pumo5g00642 196 Coils Coil 135 155 - -
Pumo5g00642 196 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 82 145 IPR004827 GO:0003700|GO:0006355
Pumo5g00642 196 Gene3D - 82 137 - -
Pumo5g00642 196 FunFam BZIP transcription factor 82 133 - -
Pumo5g00642 196 CDD bZIP_plant_GBF1 85 136 IPR045314 GO:0003700|GO:0006355
Pumo5g00642 196 MobiDBLite consensus disorder prediction 163 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00642 Pumo-Chr5 12454634 12455494 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g00642 43 179 bZIP Transcription Factor Family AT3G30530 64.029 1.13e-53 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Pumo5g00642 bZIP_1 9.6e-13 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g00642 - - gmx:780548 354.369
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g00642 5 12454634 12455494 Pumo5g00642 5 12454634 12455494 ECH
Pumo2g02348 2 50548043 50549132 Pumo5g00642 5 12454634 12455494 PCT