Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00637 ATGTTGGAGGGAGAAGCCGCGGCCACGTGGGCGCGCATGTGCGACACGTGCCGCTCCGCGCCCTCCACCGTCTTCTGCCGCGCCCACAACAACGCCTACCTCTGCGCCACGTGCGACGCGCGCGTGCACGAGTCGCTGTCGTGGCACGAGCGCGTGTGGGTGTGCGAGGCGTGCGAGCGCGCCCCGGCGGCGTTCCTCTGCAAGGCCGACGCCGCCTCCCTCTGCGCCTCCTGCGACGCCGACATCCACTCCGCCAACCCCCTCGCCAGCCGCCATCACCGCGTCCCCATCCTCCCCATCGCCGCCGGCAACGACGACGACGACGACGCTGCTGACGTCGACGACGAAGACGAAACCGCTTCGTGGCTCTTGCTCAACCCTGTCAAAGGTGCTAGTGTTCCCACTAACAATAACAACAACAACAACACTAATGGGTTCTTGTATAGTGGTGAGGTTGATGAGTATTTGGACCTTGTTGATAACTGTAACTCTTGTGGTGACACTAACCACTTTGCTGCTGCTGCTACTACTACTGATCATTATGCTCAGCACCAACATTTCGGTGGTGTTTCTCAGAAGAGTTATGCTGGGGACAGCGTGGTTCCGGTTCAGCAGCACCAGCATTTTCAGTTTGGCTTGGAGTTTGAGAACCCCAAAGCTGCCTTCAGTTACAATGGTTCTGTTAGCCAAAGTGTTTCAGTTTCATCAATGGATATTGGTGTTGTACCTGAATCACCAATGAGGGATGTCTCAATTGCCCATACAAGACCCTCCAAAGGGACAATTGACCTATTTTCTGGACCTCCCATTCAGATGCCTTCCCATTTTTCTCCAATGGACAGGGAGGCCAGAGTCCTTAGGTATAGGGAGAAGAAGAAGAATAGAAAGTTTGAGAAGACAATCAGGTATGCCTCAAGGAAGGCCTATGCAGAGACTAGACCCCGTATAAAAGGTCGTTTCGCCAAGAGAACAGATGTAGAAGCTGAAGTGGATCAGATGTTCTCTACATCACTAATTACAGAAGTTGGATATGGCATTGTTCCCTCTTTCTGA 1053 0.5375 MLEGEAAATWARMCDTCRSAPSTVFCRAHNNAYLCATCDARVHESLSWHERVWVCEACERAPAAFLCKADAASLCASCDADIHSANPLASRHHRVPILPIAAGNDDDDDAADVDDEDETASWLLLNPVKGASVPTNNNNNNNTNGFLYSGEVDEYLDLVDNCNSCGDTNHFAAAATTTDHYAQHQHFGGVSQKSYAGDSVVPVQQHQHFQFGLEFENPKAAFSYNGSVSQSVSVSSMDIGVVPESPMRDVSIAHTRPSKGTIDLFSGPPIQMPSHFSPMDREARVLRYREKKKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTDVEAEVDQMFSTSLITEVGYGIVPSF 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00637 350 SMART bboxneu5 50 97 IPR000315 GO:0008270
Pumo5g00637 350 SMART bboxneu5 9 46 IPR000315 GO:0008270
Pumo5g00637 350 ProSiteProfiles CCT domain profile. 281 323 IPR010402 GO:0005515
Pumo5g00637 350 Pfam B-box zinc finger 52 97 IPR000315 GO:0008270
Pumo5g00637 350 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 13 337 IPR045281 GO:0009909
Pumo5g00637 350 ProSiteProfiles Zinc finger B-box type profile. 50 97 IPR000315 GO:0008270
Pumo5g00637 350 Pfam CCT motif 281 323 IPR010402 GO:0005515
Pumo5g00637 350 CDD Bbox1_BBX-like 54 97 - -
Pumo5g00637 350 CDD Bbox1 13 52 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00637 Pumo-Chr5 12360902 12363702 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g00637 1 350 C2C2-CO-like Transcription Factor Family AT3G02380 54.155 1.89e-121 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Pumo5g00637 zf-B_box 3.3e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g00637 K12135 - gmx:100301886 598.971
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo2g02333 2 50051863 50053976 Pumo5g00637 5 12360902 12363702 PCT