Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00617 ATGGCTTCAACCAACCCTTCCCCAAATGCTTCCCCTGTTGCAGTGCCTCCAGCACTTGGTGGTGTTTTATCACCACCACCTTCATCATCTTCTCCAACAAATTCATCCACCCCACCATCACCTCCCAATTCTCCTCAGCCTAATCAAACACCCAATTCCCCTGCTCCTTCATCTCCTTCTGACCCTTCAGCTCCGCCTCCTTCTCCTCCTCAGGCAGTGCCTGCAACCCCTCCTCCTTCCATAACACTCTATCCTCCACCATCATCATCTACACCACCAACTTTGCCCCCTCCTTCACCACCTGATTCTCCACCACCATTACCACCAGCATCTCCAACACCACCAGTTACCACATCTCCCCCCTCACCACCAACTACCACTGCCCCTCCTCCAGCTGAAACTCCACCTTCCCTTCCAAATTTGTCTCCACCATCTCCACCAGCTGGTTCCCCTCCTCCTCAATCACCTCCCACAACAATCCCACCTCCCTCTCGACCGATTTCGCCATCTCCTCCTCCTCCAGCCAATGTTCCAAGGCCACCATCCACCACTTCTCCTCCACCGAAAGAAAGTCCTCCAAAAACTACTCCTTCACCTCCTTCACATGCATCCCCTCCATCAGTTTCTCAATCTCCTCCTAAACCTCCTTCCTCTGATGTTCCTCCTCCATCCACATTGCCATCAACTCCTCCTTCAGACCCTTCAGGATCTTCACCTCCAGCTTCTTTTCCTGACCCCCCAACTAATAAAACAGCGGCCGGGGCTCCAACGGTGTCGCTACCCTCTCTTCCAACTGAAAAACCAACTGCTAGACCAACTAATGATGGTACTAACAATATGTCTACAAACAACACACCTTCACATTCAGGAGGGTTGAGTACTGGAGGATCTGTGGCTATTGGAATTGTAGTTGGTTTTATTGTCCTCAGCCTTCTTGTTATGGCCGTGTGGTTTGTACAGAAGAAAAAGAAGAAGGGATCAGGATCAAGAGGTGGTTATGCCACTCCTTCTCCATTTACCTCATCCCACAATTCAGGCACCTTATTCTTGAGGCCGCAGTCTCCAGCCAACTTTTTAGGTAGTGGCTCTGGTAGTGATTTTTTATATTCTCCATCAGAGCCTGGTGGAGTAAGTAGTTCAAGATCATGGTTCACATATGAAGAACTTATCCAAGCTACAAATGGGTTTTCGGCACAAAATTTGTTGGGAGAAGGTGGATTTGGCTGTGTTTATAAAGGTCTGCTCATAGATGGAAGAGAAGTAGCTGTGAAACAGCTCAAAGTTGGTGGTGGGCAAGGGGAACGTGAATTCAGGGCTGAAGTTGAGATTATTAGCCGTGTACATCATCGTCATCTAGTTTCTTTGGTTGGTTACTGTATATCTGAGCATCAGAGATTGCTTGTATATGACTATGTTCCCAACAATACTCTTCATTACCATCTCCACAGTGAAAATAGACCAGTTCTGGATTGGCCTACTAGAGTCAAGGTTGCTGCTGGTGCAGCTCGTGGAATAGCTTACTTGCATGAAGACTGCCATCCACGCATTATTCATCGAGATATTAAGTCATCAAACATCCTGCTTGATCTCAACTATGAAGCTCAAGTTTCGGACTTTGGGCTTGCAAAATTGGCATTAGATTCAAATACACATGTAACTACACGTGTAATGGGAACCTTTGGGTACATGGCACCAGAATATGCGACAAGTGGGAAACTTACTGAAAAATCTGATGTATATTCTTTTGGGGTTGTGCTTTTGGAGCTAATTACAGGTCGGAAGCCTGTAGATGCATCTCAACCAATTGGCGATGAGAGCCTGGTTGAATGGGCTCGGCCTCTGTTGACGGAAGCACTTGATAACGAGGACTTTGAAATTTTGGTGGATCCAAGACTGGGAAAGAACTATGATAGAAATGAAATGTTTCGGATGATCGAGGCTGCCGCAGTGTGTGTACGCCACTCGTCAGTGAAGAGGCCACGCATGAGTCAGGTAACTAGAGCATGCCATGCAGGCAATATATATTTGTTGTTGTGA 2037 0.4723 MASTNPSPNASPVAVPPALGGVLSPPPSSSSPTNSSTPPSPPNSPQPNQTPNSPAPSSPSDPSAPPPSPPQAVPATPPPSITLYPPPSSSTPPTLPPPSPPDSPPPLPPASPTPPVTTSPPSPPTTTAPPPAETPPSLPNLSPPSPPAGSPPPQSPPTTIPPPSRPISPSPPPPANVPRPPSTTSPPPKESPPKTTPSPPSHASPPSVSQSPPKPPSSDVPPPSTLPSTPPSDPSGSSPPASFPDPPTNKTAAGAPTVSLPSLPTEKPTARPTNDGTNNMSTNNTPSHSGGLSTGGSVAIGIVVGFIVLSLLVMAVWFVQKKKKKGSGSRGGYATPSPFTSSHNSGTLFLRPQSPANFLGSGSGSDFLYSPSEPGGVSSSRSWFTYEELIQATNGFSAQNLLGEGGFGCVYKGLLIDGREVAVKQLKVGGGQGEREFRAEVEIISRVHHRHLVSLVGYCISEHQRLLVYDYVPNNTLHYHLHSENRPVLDWPTRVKVAAGAARGIAYLHEDCHPRIIHRDIKSSNILLDLNYEAQVSDFGLAKLALDSNTHVTTRVMGTFGYMAPEYATSGKLTEKSDVYSFGVVLLELITGRKPVDASQPIGDESLVEWARPLLTEALDNEDFEILVDPRLGKNYDRNEMFRMIEAAAVCVRHSSVKRPRMSQVTRACHAGNIYLLL 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00617 678 SUPERFAMILY Protein kinase-like (PK-like) 374 667 IPR011009 -
Pumo5g00617 678 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 306 669 IPR047117 -
Pumo5g00617 678 MobiDBLite consensus disorder prediction 325 346 - -
Pumo5g00617 678 Gene3D Phosphorylase Kinase; domain 1 373 471 - -
Pumo5g00617 678 ProSitePatterns Protein kinases ATP-binding region signature. 402 424 IPR017441 GO:0005524
Pumo5g00617 678 FunFam Proline-rich receptor-like protein kinase PERK8 369 471 - -
Pumo5g00617 678 ProSiteProfiles Protein kinase domain profile. 396 676 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g00617 678 MobiDBLite consensus disorder prediction 1 292 - -
Pumo5g00617 678 ProSitePatterns Serine/Threonine protein kinases active-site signature. 516 528 IPR008271 GO:0004672|GO:0006468
Pumo5g00617 678 MobiDBLite consensus disorder prediction 31 246 - -
Pumo5g00617 678 SMART serkin_6 396 642 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g00617 678 FunFam proline-rich receptor-like protein kinase PERK8 472 674 - -
Pumo5g00617 678 Gene3D Transferase(Phosphotransferase) domain 1 472 673 - -
Pumo5g00617 678 MobiDBLite consensus disorder prediction 252 292 - -
Pumo5g00617 678 Pfam Protein tyrosine and serine/threonine kinase 399 665 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00617 Pumo-Chr5 12145304 12151013 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g00617 266 668 Trihelix Transcription Factor Family AT5G38560 70.244 0.0 602
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Pumo5g00617 PK_Tyr_Ser-Thr 4.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g00617 - - gmx:100784873 833.558