Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00598 ATGGCTCTGGACCAGCCTTCGAATCCCAACGCCGTTGACGGTGCTGGTAACGGCGCGACGCCGTGCTCCGCCGTGGACGGCGGCGACGACGGGAGGCCGGCGGCGAGGCTGCCGCGGTGGACGCGGCAGGAGATTCTGGTGCTGATTCAGGGAAAGAGCGACGCGGAGAGCCGGTTCAGACCGGGTCGGGGGAGCGGTTCGGCTTTCGGTTCGAGCGAACCGAAATGGGCGTTGGTGTCCTCGTACTGCAAGAAGCACGGCGTGAACCGGGAACCGGTGCAGTGCCGGAAGCGGTGGAGCAACCTCGCCGGCGATTACAAGAAGATCAAGGAGTGGGAGTCGCAGGTGAGGGACGAAACGGACTCGTTTTGGCTCATGAGGAACGATTTGAGGAGGGAGAGGAAATTGCCTGGCTATTTTGACAGGGAGGTTTATAATATTCTCGATTCGCCGTCGTCCACGGCTGCGGCTGCGGCGGCGGAGACTCCGGTGGCGGTGGCGGCGGCGGCGGGGGATGAGGAGGTGCACCTGTATGATAGTAATCGGAGGGTGGGGAGTGAGGATGGGTTGTTTTCGGATTCTGAGAAGGACGAGGTTTTGCTTTTAGCTGCTGCCAAGGATGTTCCTGCACCTGTTCCTATCTCAGAGAAGCAATATCAACCGCTCCTCCAAGGCTGCGAAGGGGAAGGCAATCCTCAAGGTACTACCAATGAGAAACGGGCAACCCCAAATCCAGAAATGGGTTCTACATCTCAAGGGGAACGGAAGAGGAAGCGGTTTGCAACCGATGGAGAGGAGGAAACTTTGCAAAGCCAATTAATTGATGTCTTAGAAAAGAATGGCAAAATGCTACGTGATCAACTTGAAGCTCAGAACCTGAATTTCCAGTTGGATCGCCAACAGCAGAAAGACACTGCAAGTAACATAGTTGCTGTACTTGATAAGCTTGCAGATGCTCTAGGGAGAATTGCTGATAAATTGTAG 984 0.5579 MALDQPSNPNAVDGAGNGATPCSAVDGGDDGRPAARLPRWTRQEILVLIQGKSDAESRFRPGRGSGSAFGSSEPKWALVSSYCKKHGVNREPVQCRKRWSNLAGDYKKIKEWESQVRDETDSFWLMRNDLRRERKLPGYFDREVYNILDSPSSTAAAAAAETPVAVAAAAGDEEVHLYDSNRRVGSEDGLFSDSEKDEVLLLAAAKDVPAPVPISEKQYQPLLQGCEGEGNPQGTTNEKRATPNPEMGSTSQGERKRKRFATDGEEETLQSQLIDVLEKNGKMLRDQLEAQNLNFQLDRQQQKDTASNIVAVLDKLADALGRIADKL 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00598 327 Coils Coil 274 305 - -
Pumo5g00598 327 Gene3D - 40 108 - -
Pumo5g00598 327 MobiDBLite consensus disorder prediction 53 74 - -
Pumo5g00598 327 CDD GT1 38 110 - -
Pumo5g00598 327 Pfam Myb/SANT-like DNA-binding domain 39 124 IPR044822 -
Pumo5g00598 327 MobiDBLite consensus disorder prediction 1 38 - -
Pumo5g00598 327 ProSiteProfiles Myb-like domain profile. 32 103 IPR001005 -
Pumo5g00598 327 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASR3 6 327 - -
Pumo5g00598 327 MobiDBLite consensus disorder prediction 229 250 - -
Pumo5g00598 327 MobiDBLite consensus disorder prediction 251 265 - -
Pumo5g00598 327 MobiDBLite consensus disorder prediction 224 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00598 Pumo-Chr5 11792862 11796731 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g00598 39 111 Trihelix Transcription Factor Family AT1G33240 34.247 4.46e-07 49.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Pumo5g00598 Myb_DNA-bind_4 2.4e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g00598 - - gmx:100788594 612.453