Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00597 ATGCAATTCGCTAAGCTCGATGACTCTCCTATGTTCCGCAAGCAGATACAATGCATGGAGGAAAGTTCTGAATCTTTAAGAGAGAGAAGTTTAAAATTTTACAAAGGATGTAGAAAATACACTGAAGGACTTGGGGAGGCCTATGATGGAGACATTGCATTTGCAAGTGCCCTAGAAACTTTTGGTGGTGGGCATAATGACCCAATCAGTGTTGCTTTTGGAGGCCCTGTTATGACCAAATTCACCATAGCCTTAAGAGAAATTGGGACATACAAGGAAGTCCTTCGATCACAGGTTGAACATATGTTGAATGACAGATTGCTTCAGTTTGTCAATATTGATCTGCAAGAGGTCAAGGAAGCACGGAAACGCTTTGACAAGGCTAGCCTTATTTATGACCAGACTCGTGAAAGGTTTCTGTCACTAAGAAAAGGCACAAAAACTGATGTAGCTGCTGCCCTTGAAGAGGAGCTTCATAGTGCAAGATCTACATTTGAGCAAGCTCGGTTTAATCTGGTTACTGCCTTGTCAACTGTTGAAGCAAAGAAGAGATTTGAATTTTTGGAAGCAGTCAGTGGGACCATGGATGCACATCTTCGTTACTTCAAGCAGGGGTATGAATTGTTGCACCAAATGGAGCCATATATTAACCAGGTCTTGACTTATGCTCAGCAATCAAGAGAAAGGTCCAATTATGAGCAGGCAGCCCTAAATGAAAGAATGCAAGAGTACAAACGACAGATTGATCGGGAGAGTAGGTGGGCTTCAAATGGTTCTAATGGGTCTCCTAATGGAGATGGTATACAAGCCATTGGTAGAAGTTCACATAAGATGATAGAGGCAGTTATGCAATCTGCTGCCAAGGGAAAGGTTCAAACTATTCGACAAGGTTATCTCTCAAAGCGTTCCTCAAACTTAAGGGGGGACTGGAAAAGGAGATTTTTTGTTCTTGATAGTCGGGGAATGTTGTATTACTACCGTAAACAGTGCAGCAAATCATCTGGGTCTAGTAGTCAACATTCTGGCCAGAGGAATAGTTCTGAGCTTGGTTCTGGGCTTTTAAGTCGATGGCTGTCTTCTCATCATCATGGTGGAGTACATGATGAGAAGTCTGTTGCTCATCACACTGTGAACCTGCTTACATCAACAATCAAAGTAGATGCTGACCAATCAGATTTGAGGTTTTGCTTCCGGATCATTTCACCAACAAAGAACTACACTTTGCAGGCAGAGAGTGCGCTGGACCAAATGGATTGGATTGAAAAAATCACCGGTGTTATTGCCTCATTACTGAGTTCTCAGATTCCTGAAAGGATGTTGCCTGCAAGCCCAATGGGAAGCGGTCATCATAGGTCTACCAGTGAGAGTAGTTCTTTTGAAAGTTCAGATTTTGATCACACTGCTGTTGAAGAATGTGCAGCAGATAGAAGTCTTGCTTCTGCACATCTGGAGCGTCCCTCAAGAAGTTTGCAACAGCAGCGATCCTGCACTAAAAGTGAGAAGCCAATTGATGTGTTGCGAAGAGTTTGTGGGAATGATAAATGTGCTGATTGTGGTGCTCCTGAACCTGATTGGGCATCGCTAAATCTTGGTGTTCTTGTTTGCATTGAGTGTTCTGGTGTACATCGTAACCTTGGTGTGCACATATCAAAGGTCAGGTCTCTTACATTGGATGTTAAAGTGTGGGAACCTTCTGTCATTAGTTTATTTCAGTCTCTTGGGAATACTTTTGCCAACTCAGTCTGGGAGGAATTATTACAATCAAGAAGTGCCTTTCAGGTTGATCTTGTCCCTACAGGGTAA 1803 0.4282 MQFAKLDDSPMFRKQIQCMEESSESLRERSLKFYKGCRKYTEGLGEAYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQVEHMLNDRLLQFVNIDLQEVKEARKRFDKASLIYDQTRERFLSLRKGTKTDVAAALEEELHSARSTFEQARFNLVTALSTVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEPYINQVLTYAQQSRERSNYEQAALNERMQEYKRQIDRESRWASNGSNGSPNGDGIQAIGRSSHKMIEAVMQSAAKGKVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSSSQHSGQRNSSELGSGLLSRWLSSHHHGGVHDEKSVAHHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLSSQIPERMLPASPMGSGHHRSTSESSSFESSDFDHTAVEECAADRSLASAHLERPSRSLQQQRSCTKSEKPIDVLRRVCGNDKCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVISLFQSLGNTFANSVWEELLQSRSAFQVDLVPTG 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00597 600 MobiDBLite consensus disorder prediction 253 269 - -
Pumo5g00597 600 PANTHER CENTAURIN/ARF 3 590 IPR045258 GO:0005096
Pumo5g00597 600 SUPERFAMILY ArfGap/RecO-like zinc finger 500 589 IPR037278 -
Pumo5g00597 600 SUPERFAMILY PH domain-like 293 444 - -
Pumo5g00597 600 Coils Coil 151 171 - -
Pumo5g00597 600 FunFam ADP-ribosylation factor GTPase-activating protein AGD1 482 600 - -
Pumo5g00597 600 Pfam BAR domain of APPL family 6 233 IPR004148 GO:0005515|GO:0005737
Pumo5g00597 600 SMART 5bar 11 218 IPR004148 GO:0005515|GO:0005737
Pumo5g00597 600 ProSiteProfiles PH domain profile. 292 428 IPR001849 -
Pumo5g00597 600 CDD BAR_SFC_plant 14 215 IPR035670 -
Pumo5g00597 600 CDD ArfGap 503 586 - -
Pumo5g00597 600 SUPERFAMILY BAR/IMD domain-like 6 315 IPR027267 -
Pumo5g00597 600 Pfam Putative GTPase activating protein for Arf 503 588 IPR001164 GO:0005096
Pumo5g00597 600 PRINTS HIV Rev interacting protein signature 554 575 IPR001164 GO:0005096
Pumo5g00597 600 PRINTS HIV Rev interacting protein signature 512 531 IPR001164 GO:0005096
Pumo5g00597 600 PRINTS HIV Rev interacting protein signature 531 548 IPR001164 GO:0005096
Pumo5g00597 600 ProSiteProfiles ARF GTPase-activating proteins domain profile. 500 583 IPR001164 GO:0005096
Pumo5g00597 600 SMART arf_gap_3 500 600 IPR001164 GO:0005096
Pumo5g00597 600 FunFam ADP-ribosylation factor GTPase-activating protein AGD3 4 251 - -
Pumo5g00597 600 Coils Coil 227 247 - -
Pumo5g00597 600 Gene3D - 285 438 IPR011993 -
Pumo5g00597 600 Gene3D Arfaptin homology (AH) domain/BAR domain 4 251 IPR027267 -
Pumo5g00597 600 Pfam PH domain 294 427 IPR001849 -
Pumo5g00597 600 CDD PH_ACAP 295 432 - -
Pumo5g00597 600 Gene3D Arf GTPase activating protein 486 596 IPR038508 -
Pumo5g00597 600 MobiDBLite consensus disorder prediction 438 460 - -
Pumo5g00597 600 SMART PH_update 293 430 IPR001849 -
Pumo5g00597 600 MobiDBLite consensus disorder prediction 248 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00597 Pumo-Chr5 11781689 11788573 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g00597 512 591 C2H2 Transcription Factor Family AT4G21160 51.852 1.04e-19 89.0