Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00588 ATGCTGATCCCTGAGGCGTTTGTTGGATTACGATGCAAGGTTTATTGGCCCATGGATTTAAAAGCATATATTGGCTACGTCAGAAGTTATGATAAGGAAACTAAGATACATCATGTCAAGTATGATGATGGTGATGAGGAAAATTTAATTCTTGCAAATGAAAATATAAGATTCCATGTTTCCCGCGATGAGATGAAACGTTTAAAATTGAATTTTGCCAAAGTTCGTGACAATAATGTCTCTGATTATGATGTTGAAGAGATGCTTGCATTGGCTGCAAGTTTGGATGATTGCCAAGACTTTGAGCCTGGGGATATCATATGGGCCAAGCTAACAGGTCATGCAATGTGGCCAGCTGTTGTTCTGGATGAATCACTTGCTAGCAACTGTAAGGGTTTAAAGATGTTTTTGGGAGGAAGATCAGTTCCTGTCCAATTTTTTGGCACCCATGACTTTGCAAGGGTTAGACTGCAACAGGTGAAATCATTTCTCAGTGGACTTCTTACTGATCTACACTCAAAATGCAAGAAACATAGTTTTATTGAAGGTTTAGAAGAGGCAAAAAGATATTTAAGTGAACAGAAGCTTCCATTGGAGATGCTAGAGTTGCAGAAAAGATGTACAGCTGATGACTGTAACAACGTAAGTGGAGAGGATGGAGGATGTACAGTTTCAGGTGATGATTGTTTACATGACAAGGGGACTGTGACGGCTCTGGAAATCATTGAAACTTTTCCATACGAAGTAGGAGACCTCCAAATTCTAAGCCTTGGAAAAATAGTTGAAGATTCTGCATTCAGGGATGAAAGATTCATCTGGCCTGAAGGGTACATGGCAGTGAGGAAGTTTACTTCAGTTACTGACCCTAAAGTTTCTGCTCCTTATAAGATGGAGGTGTTGAGAGATCCAGAATCCAAAGTTCGTCCTCTGTTTAGAGTGACAGTTGATGGTGGTGAGCAGTTCAATGGTTATACACCATCTGCTTGCTGGAATGAGCTATACAAAAGGATAAAGAAAACGGAAAAGGATGCTTCTGAAGGTACTGTTGCTGAAGGTGGGGTAGAAAAGGGCTACGAATCTGGGTCTGATATGTTTGGTTTCTCCAATCCTAAAGTACTTAAACTTATACAGGGATTGTCTAAATCCAAAATCTCTTTGAAGAACTCAATTTGCAAGTTAGGTTCCAGAAGATATAATAATAACTTGCCTCTTGGTTATAGACAAGTTCATATTAACTGGTTTGACCTTGATAAGTGCAATGTGTGCCACATGGATGAGGAGTATGAGAACAATCTGTTTCTGCAGTGTGACAAATGCAGAATGATGGTCCATGCTAGATGCTACGGGGAACTGGAACCTGTTAATGGGGTTCTATGGTTATGCAACTTATGTCGTTCGGGTGCTCCTCCTCCACCTTGCTGCTTATGTCCACTCATAGGTGGTGCAATGAAGCCTACTACAGATGGCCGGTGGGCTCATTTGGCTTGTGCCATGTGGATACCTGAAACTTGCTTAGCTGATGTCAAGAGAATGGAGCCTATTGATGGTTTGAGTAGAATCAGTAAGGACCGCTGGAAGTTGTTATGCAGCATATGCGGTGTATCTTATGGTGCCTGCATCCAATGTTCAAATAGTTCTTGTCGAGTAGCATATCATCCACTCTGTGCACGTGCTGCTGGTCTCTGTGTTGAGCTTGAGAATGAGGACAGGCTCTATCTACTTTCTGTTGATGATGATGAAGATCAGTGCATACGCTTACTTTCTTTCTGCAAGAAACATAGGCAACCATCTAATGAACCTTCTGTTGCTGATGAACGTATAGTTCGAGTTGCTGGTCAATGTTCAGACTATGAACCACCACCCAATCCGTCTGGTTGTGCTCGAAGTGAACCATATGATTGCTTTGGCAGGAGAGGTCGAAAAGAACCTGAAGCACTTGCAGCTGCATCGTTGAAACGTTTGTTTGTGGAGAATCAACCTTACTTAGTAGGTGGATACTGCCAGCATGGTTCATTAAACAACCCAGAGCCTTCTGGCAGAGGAGTCTGCTCTAAATTCTTTTGTAGCCAACAAAGGCTGAGAACCTCTCTGATTGACACATCAAACAGCATACTTTCTATCTCTGAAAAATATACTTACATGAGGGAAACCTTTCGGAAACGGCTGGCATTTGGGAAATCAAGAATTCATGGATTTGGCATCTTTGCAAAGCATCCATATAAAGGTGGAGACATGGTGATTGAATACACTGGCGAACTTGTTAGACCAACTATAGCTGACAGGAGAGAGCACTTCATATACAATTCGTTGGTGGGTGCTGGAACATATATGTTTCGTATCGATGATGAACGAGTCATTGATGCTACCAGAGCAGGAAGCATTGCTCATTTAATTAATCATTCTTGTGCACCAAATTGCTATTCCAGAGTTATAAGTGTTAATGGCGATGAGCATATTATAATATTTGCAAAGAGGGACATTAAACAGTGGGAAGAGCTTACATATGATTACAGATTTTTCTCAATTGATGAACGACTTGCTTGTTATTGTGGCTTCCCAAAGTGCCGAGGTATAGTAAATGATACAGAGGCAGAAGAACGAGCTGCTACCCTATATGCACCACGAAGCGAATTAATAGATTGGAGAGGAGAATGA 2655 0.4143 MLIPEAFVGLRCKVYWPMDLKAYIGYVRSYDKETKIHHVKYDDGDEENLILANENIRFHVSRDEMKRLKLNFAKVRDNNVSDYDVEEMLALAASLDDCQDFEPGDIIWAKLTGHAMWPAVVLDESLASNCKGLKMFLGGRSVPVQFFGTHDFARVRLQQVKSFLSGLLTDLHSKCKKHSFIEGLEEAKRYLSEQKLPLEMLELQKRCTADDCNNVSGEDGGCTVSGDDCLHDKGTVTALEIIETFPYEVGDLQILSLGKIVEDSAFRDERFIWPEGYMAVRKFTSVTDPKVSAPYKMEVLRDPESKVRPLFRVTVDGGEQFNGYTPSACWNELYKRIKKTEKDASEGTVAEGGVEKGYESGSDMFGFSNPKVLKLIQGLSKSKISLKNSICKLGSRRYNNNLPLGYRQVHINWFDLDKCNVCHMDEEYENNLFLQCDKCRMMVHARCYGELEPVNGVLWLCNLCRSGAPPPPCCLCPLIGGAMKPTTDGRWAHLACAMWIPETCLADVKRMEPIDGLSRISKDRWKLLCSICGVSYGACIQCSNSSCRVAYHPLCARAAGLCVELENEDRLYLLSVDDDEDQCIRLLSFCKKHRQPSNEPSVADERIVRVAGQCSDYEPPPNPSGCARSEPYDCFGRRGRKEPEALAAASLKRLFVENQPYLVGGYCQHGSLNNPEPSGRGVCSKFFCSQQRLRTSLIDTSNSILSISEKYTYMRETFRKRLAFGKSRIHGFGIFAKHPYKGGDMVIEYTGELVRPTIADRREHFIYNSLVGAGTYMFRIDDERVIDATRAGSIAHLINHSCAPNCYSRVISVNGDEHIIIFAKRDIKQWEELTYDYRFFSIDERLACYCGFPKCRGIVNDTEAEERAATLYAPRSELIDWRGE 884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00588 884 ProSiteProfiles FYR domain FYRN motif profile. 244 302 IPR003888 GO:0005634
Pumo5g00588 884 SUPERFAMILY SET domain 717 857 IPR046341 -
Pumo5g00588 884 CDD ePHD_ATX1_2_like 479 593 IPR041956 -
Pumo5g00588 884 FunFam Histone-lysine N-methyltransferase 653 877 - -
Pumo5g00588 884 Gene3D - 6 59 - -
Pumo5g00588 884 SMART fyrn_3 258 302 IPR003888 GO:0005634
Pumo5g00588 884 CDD PWWP_AtATX1-like 102 197 - -
Pumo5g00588 884 FunFam Histone-lysine N-methyltransferase 468 596 - -
Pumo5g00588 884 CDD Tudor_Agenet_AtEML-like 8 58 - -
Pumo5g00588 884 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 465 596 IPR013083 -
Pumo5g00588 884 ProSiteProfiles Extended PHD (ePHD) domain profile. 470 594 IPR034732 -
Pumo5g00588 884 Gene3D - 245 384 - -
Pumo5g00588 884 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 410 464 IPR013083 -
Pumo5g00588 884 ProSiteProfiles PWWP domain profile. 103 166 IPR000313 -
Pumo5g00588 884 Pfam PWWP domain 104 191 IPR000313 -
Pumo5g00588 884 ProSiteProfiles Zinc finger PHD-type profile. 416 467 IPR019787 -
Pumo5g00588 884 Pfam F/Y rich C-terminus 308 381 IPR003889 GO:0005634
Pumo5g00588 884 SMART PWWP_4 101 164 IPR000313 -
Pumo5g00588 884 SMART fyrc_3 310 399 IPR003889 GO:0005634
Pumo5g00588 884 Gene3D SET domain 666 872 IPR046341 -
Pumo5g00588 884 CDD PHD_ATX1_2_like 418 464 IPR042010 -
Pumo5g00588 884 Gene3D - 91 202 - -
Pumo5g00588 884 ProSiteProfiles Post-SET domain profile. 844 860 IPR003616 -
Pumo5g00588 884 Pfam F/Y-rich N-terminus 250 299 IPR003888 GO:0005634
Pumo5g00588 884 SMART set_7 720 844 IPR001214 GO:0005515
Pumo5g00588 884 SUPERFAMILY Tudor/PWWP/MBT 97 198 - -
Pumo5g00588 884 SUPERFAMILY FYVE/PHD zinc finger 519 558 IPR011011 -
Pumo5g00588 884 SUPERFAMILY FYVE/PHD zinc finger 410 480 IPR011011 -
Pumo5g00588 884 Pfam PHD-zinc-finger like domain 472 593 - -
Pumo5g00588 884 Pfam PHD-finger 431 465 - -
Pumo5g00588 884 ProSiteProfiles FYR domain FYRC motif profile. 306 392 IPR003889 GO:0005634
Pumo5g00588 884 ProSiteProfiles SET domain profile. 720 838 IPR001214 GO:0005515
Pumo5g00588 884 Pfam SET domain 731 837 IPR001214 GO:0005515
Pumo5g00588 884 SMART PHD_3 528 594 IPR001965 -
Pumo5g00588 884 SMART PHD_3 418 465 IPR001965 -
Pumo5g00588 884 ProSitePatterns Zinc finger PHD-type signature. 419 464 IPR019786 -
Pumo5g00588 884 CDD SET_SETD1-like 708 856 - -
Pumo5g00588 884 PANTHER PHD FINGER PROTEINS 8 868 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00588 Pumo-Chr5 11652318 11668615 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g00588 419 564 C2H2 Transcription Factor Family AT3G14740 39.735 7.24e-27 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pumo5g00588 zf-HC5HC2H_2 2.9e-33 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g00588 - - gmx:100808923 1748.41