Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00584 ATGGCGGATAGTGTTGTCAGCTTTCTAGTTCAGAACTTGTCACGGCTGCTTGACAATGAACTAAAGTTGTTTTCTGGTGTGGAGGGGAAAATCAAATCCCTGTGCAATGAGCTCAAGTTCATTGACGTCTTCCTCAAGAGCTCTGAGGGGAAGCACAGTGATGAGGTAGTGAAACAAGTGGTGAGCCAAATAAGAGATGTCGCCCACAAAGCAGAAGATGTAGTTGACGCCTACTTTGCCAACATCACCAAACACAAACGCAGAAACAAACTGAGCAAGTTATTCCACTTCAAAGAACGATGCATGGTGCTTCATGAAGTCAACGCTGAGATAGAGAAAATCAAGAGCTGTATTGACGAGATTTATAAGAACAAGGAGAGATATGGCATTGGAGAAGGTGAATTCCAAAGTAAAGAAGCAGCTGTAGCAGAATCACTCCGCAAAAGGAGGAGGGATGTGGAGGAAGAAGAAGTAGTGGGCTTAGTGCATGACTCCAGCGTTGTAATTCAGCAGCTCATGGAAAGTGATCATTCACGTCTTAAAGTTGTTTCCATAATCGGGATGGGAGGGTTGGGCAAGACCACTCTTGCTCGAAAGATCTATAACAACAACATTGTGAAGGAGCTGTTTCCTTGCCATGCATGGGGTTATGTGTCTAATGATTACAGACCCAAGGAGCTTATGCTGAGCCTTCTCAAGTGTTTACTATCCACATCTGAATATAACAATTTATTCAAGAAAACAACAGATGAAGGTGAATATTTAAGTCAGGAAGAACTGAAGAAGAAGGTGAAAACAATGCCTGGAGGTGATGATTTAATATGGGATGAGGTTAAAGGAGCCTTTCCAGATGACAAAAATGGTAGCAGAATACTGATAACTAGCCGTATAAAGGAGGTGGCACACTATACAGGAACCGCGTCTCCCTACTACCTTCCCTTCCTCAATAAAGATGAAAGTTGGGAACTCTTCTCTAAGAAGGTGTTTCAAGGTGAAGAATGCCCATCTGATTTAGAGCCTCTGGGTAGATCCATTGCCGAAACTTGTGGGGGTTTACCACTTGCCATTGTGGTCTTAGCAGGACTCGTTGCCAAGAAGGAGAAGTCACAAAGGGAGTGGTCGAGAATCAAGGAAGTGAGTTGGCATCTTACTCATGACAAGACTGAAGTGATGGATACACTTAAGCTTAGCTACGATAGTTTGCCTGGAAGATTAAAGCCTTGCTTTCTATGTTTTGGAATCTATCCAGAAGACTATGAGATCAGTGCAAGGCAATTAATCCAATTGTGGATCGCGGAAGGGTTCATACAACCTCAAGAAACAACAGAACTGGAAGATGTTGCTGAGTATTACTTGGATGAGCTGGTGGATCGCAGCTTGGTGCAAGTGGCAAAAAGGAGGAGTGATGGGGGTGTCAAGACATGTCGGATTCATGATCTTTTGCGTGATCTCTGCATATCAGAGAGCAAATCTGATAAGTTTCTGGAGGTTTGCACAGAGTCTAATATTGGTATCGTGAGTAATACGAATCCCCGTAGATTGTCCTTCCACTGCAAACCACAGTCTTATATCTCAGCAAACACATTTGACAAATCATGCACTCGTTCTATGTTCATCTTTACTAGTGATAGTATGCCCCTAGATTATATTTTGAAAAGCTTCAAGTTGGCTCGTGTGCTTCATTTTGAACCTTATGAACCGTTATTGTGTTATTCACTTCCCAGCAATTTCAAGAGGATGATCCATCTAAGATACTTGAGAATAAGCGTTGCCAACAAACTTCCAGCTTGTGTATGCAGCCTTTGGAATCTAGAAACACTACATGTAACATATGAAACCACAGTACCTAGTGAAATTTGGATGTTGAAGCGACTGAGACATCTTTATTTGATTGGGGGAAAGAAGTTACCAGTCCTGCCAAAAGCAAATAGAATGGAGAATCTCCAAACCCTTTGGTTAAGTGCTAAGGATCCACAAATTATTTCCCTTCTAAACAATGACATATTTCCTAGGTTGAGAAAATTAGCTTTGCACTATTCTTTTCGTTCGGGAGTAATACCTAGGTTGCCAAGTGTACACCATCTAAGCAATCTTCGCAGCCTAAAAATAATTGACCGTGTAAAACTTCCATCAGATGCCAATGAGTTTCCACCAGATCTTACCAAGATAACCTTGGTAATAATAGACTGGAATCCCCTCTATTTCATGAAGACACTAGGACGGCTTGACAACCTCCAAATTTTGAAACTAGTTGCACAAGATAGTGGTGTTTTGTTTAGTTTTGATTTTGGCAGGGGAGAGTTCCCGCAACTTCAAGTGATTCATATGAGGGGAATAAAGGTCAGACTGTGGAGATTAGAGAGAGATGCAATGCCCCGACTTCAACATCTGGTCATTAACAAATGTCTTTACTTGCCTGAGCTTCCTGAACAACTTTGGTCACTGACTACCTTACGACTGGTGCATGTTTTGCAGCCCTCCCAAGAATTGGCTAACAGCCTCCAAAATGTAGAGTTGAGGAATGGCTGTAAGCTCATTATCTCTAATGCTCCAAAACTGTTGGAATAA 2568 0.4202 MADSVVSFLVQNLSRLLDNELKLFSGVEGKIKSLCNELKFIDVFLKSSEGKHSDEVVKQVVSQIRDVAHKAEDVVDAYFANITKHKRRNKLSKLFHFKERCMVLHEVNAEIEKIKSCIDEIYKNKERYGIGEGEFQSKEAAVAESLRKRRRDVEEEEVVGLVHDSSVVIQQLMESDHSRLKVVSIIGMGGLGKTTLARKIYNNNIVKELFPCHAWGYVSNDYRPKELMLSLLKCLLSTSEYNNLFKKTTDEGEYLSQEELKKKVKTMPGGDDLIWDEVKGAFPDDKNGSRILITSRIKEVAHYTGTASPYYLPFLNKDESWELFSKKVFQGEECPSDLEPLGRSIAETCGGLPLAIVVLAGLVAKKEKSQREWSRIKEVSWHLTHDKTEVMDTLKLSYDSLPGRLKPCFLCFGIYPEDYEISARQLIQLWIAEGFIQPQETTELEDVAEYYLDELVDRSLVQVAKRRSDGGVKTCRIHDLLRDLCISESKSDKFLEVCTESNIGIVSNTNPRRLSFHCKPQSYISANTFDKSCTRSMFIFTSDSMPLDYILKSFKLARVLHFEPYEPLLCYSLPSNFKRMIHLRYLRISVANKLPACVCSLWNLETLHVTYETTVPSEIWMLKRLRHLYLIGGKKLPVLPKANRMENLQTLWLSAKDPQIISLLNNDIFPRLRKLALHYSFRSGVIPRLPSVHHLSNLRSLKIIDRVKLPSDANEFPPDLTKITLVIIDWNPLYFMKTLGRLDNLQILKLVAQDSGVLFSFDFGRGEFPQLQVIHMRGIKVRLWRLERDAMPRLQHLVINKCLYLPELPEQLWSLTTLRLVHVLQPSQELANSLQNVELRNGCKLIISNAPKLLE 855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00584 855 CDD RX-CC_like 2 121 IPR038005 -
Pumo5g00584 855 FunFam Probable disease resistance protein At1g63360 398 487 - -
Pumo5g00584 855 Gene3D - 404 487 IPR036388 -
Pumo5g00584 855 Pfam NB-ARC domain 168 399 IPR002182 GO:0043531
Pumo5g00584 855 Pfam Rx N-terminal domain 5 92 IPR041118 -
Pumo5g00584 855 PRINTS Disease resistance protein signature 349 363 - -
Pumo5g00584 855 PRINTS Disease resistance protein signature 182 197 - -
Pumo5g00584 855 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 146 411 IPR027417 -
Pumo5g00584 855 Gene3D - 140 307 IPR027417 -
Pumo5g00584 855 Gene3D Ribonuclease Inhibitor 500 854 IPR032675 -
Pumo5g00584 855 Gene3D - 5 123 - -
Pumo5g00584 855 SUPERFAMILY L domain-like 476 822 - -
Pumo5g00584 855 Gene3D - 314 402 IPR042197 -
Pumo5g00584 855 PANTHER DISEASE RESISTANCE PROTEIN RP 45 783 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00584 Pumo-Chr5 11550269 11553161 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g00584 169 484 WRKY Transcription Factor Family AT5G45050 24.691 5.01e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g00584 - - gmx:100787796 1149.04