Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00579 ATGACTCAGGCTGTGGAGGTGCTGAATCGGTATGGGACTGATCTGGTGGGGGAACCGAGAGGTTCTGATTCTGAGTGTTTGGCGGGTTTTGAGTGTTTTCTGAACATTGTGAGGGCATTGGGAATGGGATCGTGCATCTCGGAGGTTGGAGCTGGTGGTAGTTCACCTCCTCTTCTTCCTTTTTCGCCTGAATCCAACATGGATGGTGGGAAGAAGAGGAGGTTGAGGGGTTCCTCTTCCTTTGATTTGAAAGTGCCTGGGAGGATGTTCTTGAATGGGTCAAGCGAGGTTGCATCCATGTATTGCAAGCAAGGAAGAAAAGGGATCAACCAAGATGCTATGCTTGTTTGGGAGAACTTTTGTTCAAAGGAAGACACCATTTTTTGTGGTGTTTTTGATGGTCATGGCCCTTATGGCCACAGAGTTGCAAAGAAAGTTAGGGATTCTTTTCCTTTAAAGCTTAATGCCCAATGGGATTTGCATCATAAGAATAGAGATGGACTCAGTGATCATAGCAGTGCCACAGGAAGTTATAAATCTGAAGGGAATGGATTTAGACTGGTGGATGAGAAAACTAGTCCCATTGATCATGAACTTGATGAAACAGATACTATATTGACATTAAGAGAATCTTTTTTGAAGGCTTGTAAGATTATGGATAAAGAACTGAAACTACATCCTGATATTGACTGCTTTTGTAGTGGGACTACAGCAGTTACCTTGGTCAAGCAAGGGCTGGACCTTGTTATTGGAAATATTGGGGACTCGAGAGCTGTATTGGGTACCCGAGATCATGATGATTCTCTTATTGCTGTTCAGTTGACCATTGACCTTAAGCCAAATCTTCCAAGGGAAGAAGAGAGGATCAAGCTTCGTAGAGGAAGGGTTTTTTCACTTCAGAATGAACCTGAGGTGGCTCGAGTTTGGCTGCCTAACTCTGATTTCCCTGGTCTTGCTATGGCCCGGGCATTTGGAGACTTTTGCCTTAAGGACTTTGGATTGATTGCTGTTCCAGATATCTCATATCACCGCCTTACCGAGAAGGATGAATTTGTTGTGTTAGCAACAGATGGGATTTGGGATGTTTTATCAAATGAAGAAGTTGTGGACATTGTAGCATCTGCTCCACGGTCTAATGCTGCTAGAGCACTGGTTGAGTCAGCTGTTCAGGCATGGAAGACAAAATTTCCTTTTTGTAAGGTTGATGATTGTGCCGCGGTTTGCCTCTTCTTTGATTCTGATTCAGATTTCAAGTCAACTGATACCGAAGACAAGTTGATACCGGATGCATCTATTGACCAATCTGAGCAGTTATCTTTACTTGGTGAAAAGGGAGTTGGAATGGAAGCTGAAAAACAGCAGCAATAG 1368 0.4364 MTQAVEVLNRYGTDLVGEPRGSDSECLAGFECFLNIVRALGMGSCISEVGAGGSSPPLLPFSPESNMDGGKKRRLRGSSSFDLKVPGRMFLNGSSEVASMYCKQGRKGINQDAMLVWENFCSKEDTIFCGVFDGHGPYGHRVAKKVRDSFPLKLNAQWDLHHKNRDGLSDHSSATGSYKSEGNGFRLVDEKTSPIDHELDETDTILTLRESFLKACKIMDKELKLHPDIDCFCSGTTAVTLVKQGLDLVIGNIGDSRAVLGTRDHDDSLIAVQLTIDLKPNLPREEERIKLRRGRVFSLQNEPEVARVWLPNSDFPGLAMARAFGDFCLKDFGLIAVPDISYHRLTEKDEFVVLATDGIWDVLSNEEVVDIVASAPRSNAARALVESAVQAWKTKFPFCKVDDCAAVCLFFDSDSDFKSTDTEDKLIPDASIDQSEQLSLLGEKGVGMEAEKQQQ 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00579 455 PANTHER PROTEIN PHOSPHATASE 84 409 IPR015655 GO:0004722|GO:0006470
Pumo5g00579 455 SMART PP2C_4 91 409 IPR001932 -
Pumo5g00579 455 MobiDBLite consensus disorder prediction 57 76 - -
Pumo5g00579 455 SUPERFAMILY PP2C-like 94 412 IPR036457 -
Pumo5g00579 455 ProSiteProfiles PPM-type phosphatase domain profile. 97 411 IPR001932 -
Pumo5g00579 455 Gene3D - 92 420 IPR036457 -
Pumo5g00579 455 FunFam probable protein phosphatase 2C 33 92 414 - -
Pumo5g00579 455 Pfam Protein phosphatase 2C 179 389 IPR001932 -
Pumo5g00579 455 CDD PP2Cc 97 411 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00579 Pumo-Chr5 11532891 11538839 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g00579 70 415 PP2C-type Phosphatase Gene Family AT1G16220 59.331 1.77e-148 430
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g00579 - - gmx:100802479 872.463