Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00571 ATGACTAGTTTTCAGTTTCACTTGAGAGTTTTGAGTTTGCTGATTTCAGTTTCCTATTTGCTGACATGCTTGGGGAACAATGACATGCCTCCTGCCCAGTTGAATGATGATGTTCTTGGCCTGATTGTGTTCAAATCAGACCTTCATGACCCTTCTTCTTATCTTGCTTCGTGGAATGAAGATGATGTCAATCCATGTTCATGGCAGTTCGTGCAGTGCAATCCTGAGAGTGGAAGAGTTTCTGAGGTCTCATTGGATGGCTTGGGACTATCTGGGAAGATTGGAAGAGGTCTTGAGAAGTTGCAGCATCTAACGGTATTGTCCCTTTCTCACAACAACTTGAGTGGGAGTATTAGTCCATCACTCACTCTTTCCAATAGTCTTGAGAGGCTGAACCTTAGTCACAATGCTCTTTCTGGTCCCACTCCTACTTCTTTTGTGAATATGAATTCAATAAAATTTCTTGATCTTTCAGAGAATTCTTTCTCAGGACCAATCCCTGAGAGTTTTTTTGAGAGCTGTTCTTCCCTTCATCACATTTCTCTAGCTAGGAACATGTTTGATGGACCAGTTCCTGGCTCACTGTCTAGATGTTCCTCATTGAATAGCCTTAATCTTTCCAATAATCGTTTCTCTGGGAATGTGGACTTTAGAGGGATTTGGTCATTGAACAGGCTTAGGACTTTGGATCTATCCAACAATGCCTTATCAGGGTCTTTACCTAATGGAATTTCATCCATACATAACTTTAAAGAAATCTTATTACAAGGTAACCAGTTTTCAGGTCCATTATCCACTGATATTGGATTCTGCTTGCATCTGAATAGGTTGGATTTCAGTGATAATCAGTTCAGTGGAGAACTACCCGAGTCACTAGGGAGGCTTAGTTCTTTGAGCTATTTCAAGGCATCAAATAATCATTTCAACAGTGAATTCCCTCAATGGATTGGTAACATGGCCAGTCTGGAGTACCTAGAGCTCTCAAACAATGAGTTCACTGGAAGCATCCCACAGTCAATAGGGGAACTGAGATCACTGACTCATCTGAGCATTTCAAATAACAAGCTTGTTGGAACTATTCCATCATCATTAAGTTCCTGCACAAAGTTATCTGTGGTCCAGCTCAGAGGCAATGGTTTCAGTGGCACCATTCCAGAGGGTTTGTTTGCCCTAGGATTGGAGGAAATAGACTTGTCCCATAATGAATTGAGTGGCTCAATTCCAGCAGGATCAAGCAGGATCTTGGAAACTCTCACCAACTTGGATCTTTCAGATAACCATCTCCAAGGGAATATCCCGGCAGAAACTGGTCTTCTTTCCAAACTAAGATATTTGAATCTGTCTTGGAATGATCTTCATTCACAGATGCCTCCAGAATTTGGCCTCCTTCAGAACCTGACAGTTTTGGATCTTCGCAACAGTGCCTTGCATGGTTCAATTCCAGCAGATATATGTGACTCAGGCAATTTAGCTGTCCTACAACTAGATGGAAATTCATTAGAAGGGAATATTCCGTCCGAGCTTGGAAATTGTAGCTCTCTATACTTGCTGAGTTTGTCTCACAATAATTTGACTGGTTCAATTCCAAAGTCCTTGTCAAAGCTAAACAAGCTCAAAATCCTCAAGCTGGAATTCAATGAACTAAGTGGAGAGATACCAATGGAGCTTGGAATGCTTCAGAGTCTTCTTGCTGTGAACATATCATACAACAGGCTCACAGGCAGGCTTCCTACAGGTAGCATATTCCAGAACTTGGACAAAAGTTCCTTGGAAGGAAACCTGGGTCTTTGTTCACCCTTGTTGAAGGGTCCATGTAAGATGAATGTCCCCAAACCACTAGTGCTTGACCCAAATGCATATAACAACCAAATAAGTCCTCAGAGGCAAAGAACCGAATCATCCGAGACCGGCCCGGTCCATCGCCACAGGTTCCTTAGTGTATCTGCTATCGTAGCAATATCTGCATCCTTTGTCATTGTATTAGGAGTGATTGCTGTTAGCCTACTTAATGTTTCTGTAAGGAGAAGGCTAACATTTGTAGATAATGCTTTGGAAAGCATGTGCTCAAGCTCTTCAAGATCAGGAAGTCCAGCCACAGGAAAGCTTATTCTGTTTGATTCCCAATCCTCACCTGATTGGATCAGCAATCCGGAGTCCTTGCTCAACAAGGCATCTGAGATTGGAGAAGGAGTCTTTGGAACACTTTACAAGGTTCCATTGGGATCACAAGGTAGAATGGTAGCAATCAAGAAGCTTATATCCTCTAACATAATCCAATATCCAGAAGACTTTGATAGGGAAGTTAGAATCCTAGGGAAAGCAAGGCACCCAAATCTAATAGCATTGAAAGGATACTATTGGACTCCTCAATTACAGCTTTTAGTAACTGAGTTTGCACCAAATGGTAGCTTGCAAGCCAAGCTACATGAAAGGCTTCCTTCAAGTCCTCCTCTTTCTTGGGCTATAAGGTTCAAAATCTTGCTTGGAACAGCAAAGGGGCTTGCTCATTTGCACCACTCTTTCCGTCCACCAATCATCCACTACAACATAAAGCCAAGTAACATTTTGCTTGACGAAAATTACAACGCCAAGATCTCGGATTTTGGGTTGGCTCGGCTTCTGACAAAGCTGGACAAGCATGTGATGAGCAACAGGTTTCAGAGTGCATTAGGATATGTGGCACCAGAGTTAGCATGCCAGAGCTTAAGGGTCAATGAAAAATGTGATGTGTATGGTTTTGGGGTGATGATCCTTGAGCTGGTGACAGGTAGAAGGCCAGTGGAGTATGGAGAAGACAATGTGCTGATACTGAATGACCATGTGAGGGTGCTGCTTGAGCAAGGTAATGTGTTAGAGTGTGTGGATCAAAGCATGAGTGAGTATCCAGAAGATGAGGTATTGCCTGTTCTGAAGCTAGCAATGGTATGCACCTCTCAAATTCCTTCTAGCAGGCCTACTATGGCTGAAGTGGTGCAAATACTGCAGGTCATTAAAACCCCAGTTCCTCAAAGGATGGAAGTGTTTTAA 3027 0.4265 MTSFQFHLRVLSLLISVSYLLTCLGNNDMPPAQLNDDVLGLIVFKSDLHDPSSYLASWNEDDVNPCSWQFVQCNPESGRVSEVSLDGLGLSGKIGRGLEKLQHLTVLSLSHNNLSGSISPSLTLSNSLERLNLSHNALSGPTPTSFVNMNSIKFLDLSENSFSGPIPESFFESCSSLHHISLARNMFDGPVPGSLSRCSSLNSLNLSNNRFSGNVDFRGIWSLNRLRTLDLSNNALSGSLPNGISSIHNFKEILLQGNQFSGPLSTDIGFCLHLNRLDFSDNQFSGELPESLGRLSSLSYFKASNNHFNSEFPQWIGNMASLEYLELSNNEFTGSIPQSIGELRSLTHLSISNNKLVGTIPSSLSSCTKLSVVQLRGNGFSGTIPEGLFALGLEEIDLSHNELSGSIPAGSSRILETLTNLDLSDNHLQGNIPAETGLLSKLRYLNLSWNDLHSQMPPEFGLLQNLTVLDLRNSALHGSIPADICDSGNLAVLQLDGNSLEGNIPSELGNCSSLYLLSLSHNNLTGSIPKSLSKLNKLKILKLEFNELSGEIPMELGMLQSLLAVNISYNRLTGRLPTGSIFQNLDKSSLEGNLGLCSPLLKGPCKMNVPKPLVLDPNAYNNQISPQRQRTESSETGPVHRHRFLSVSAIVAISASFVIVLGVIAVSLLNVSVRRRLTFVDNALESMCSSSSRSGSPATGKLILFDSQSSPDWISNPESLLNKASEIGEGVFGTLYKVPLGSQGRMVAIKKLISSNIIQYPEDFDREVRILGKARHPNLIALKGYYWTPQLQLLVTEFAPNGSLQAKLHERLPSSPPLSWAIRFKILLGTAKGLAHLHHSFRPPIIHYNIKPSNILLDENYNAKISDFGLARLLTKLDKHVMSNRFQSALGYVAPELACQSLRVNEKCDVYGFGVMILELVTGRRPVEYGEDNVLILNDHVRVLLEQGNVLECVDQSMSEYPEDEVLPVLKLAMVCTSQIPSSRPTMAEVVQILQVIKTPVPQRMEVF 1008
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00571 1008 ProSitePatterns Protein kinases ATP-binding region signature. 727 751 IPR017441 GO:0005524
Pumo5g00571 1008 Pfam Leucine rich repeat N-terminal domain 35 74 IPR013210 -
Pumo5g00571 1008 Gene3D Ribonuclease Inhibitor 342 611 IPR032675 -
Pumo5g00571 1008 Pfam Leucine rich repeat 103 161 IPR001611 GO:0005515
Pumo5g00571 1008 Pfam Leucine rich repeat 304 356 IPR001611 GO:0005515
Pumo5g00571 1008 Pfam Protein kinase domain 723 992 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g00571 1008 SUPERFAMILY L domain-like 52 388 - -
Pumo5g00571 1008 FunFam Inactive leucine-rich repeat receptor-like protein kinase 314 608 - -
Pumo5g00571 1008 SUPERFAMILY Protein kinase-like (PK-like) 724 1002 IPR011009 -
Pumo5g00571 1008 PRINTS Leucine-rich repeat signature 415 428 - -
Pumo5g00571 1008 PRINTS Leucine-rich repeat signature 226 239 - -
Pumo5g00571 1008 PANTHER OS05G0588300 PROTEIN 222 340 - -
Pumo5g00571 1008 ProSiteProfiles Protein kinase domain profile. 721 997 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g00571 1008 ProSiteProfiles Leucine-rich repeat profile. 103 125 IPR001611 GO:0005515
Pumo5g00571 1008 SUPERFAMILY L domain-like 312 590 - -
Pumo5g00571 1008 Gene3D Phosphorylase Kinase; domain 1 721 802 - -
Pumo5g00571 1008 Pfam Leucine Rich repeat 440 452 IPR001611 GO:0005515
Pumo5g00571 1008 SMART LRR_typ_2 439 462 IPR003591 -
Pumo5g00571 1008 SMART LRR_typ_2 343 367 IPR003591 -
Pumo5g00571 1008 SMART LRR_typ_2 463 487 IPR003591 -
Pumo5g00571 1008 SMART LRR_typ_2 319 342 IPR003591 -
Pumo5g00571 1008 SMART LRR_typ_2 223 247 IPR003591 -
Pumo5g00571 1008 SMART LRR_typ_2 101 126 IPR003591 -
Pumo5g00571 1008 SMART LRR_typ_2 127 148 IPR003591 -
Pumo5g00571 1008 ProSiteProfiles Leucine-rich repeat profile. 417 439 IPR001611 GO:0005515
Pumo5g00571 1008 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 799 1003 - -
Pumo5g00571 1008 Gene3D Ribonuclease Inhibitor 218 272 IPR032675 -
Pumo5g00571 1008 Gene3D Ribonuclease Inhibitor 150 217 IPR032675 -
Pumo5g00571 1008 Gene3D Ribonuclease Inhibitor 38 149 IPR032675 -
Pumo5g00571 1008 Gene3D Ribonuclease Inhibitor 273 341 IPR032675 -
Pumo5g00571 1008 CDD STKc_IRAK 727 995 - -
Pumo5g00571 1008 FunFam Probably inactive leucine-rich repeat receptor-like protein kinase At3g28040 195 289 - -
Pumo5g00571 1008 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 34 194 - -
Pumo5g00571 1008 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 715 798 - -
Pumo5g00571 1008 Pfam Leucine Rich Repeat 225 245 IPR001611 GO:0005515
Pumo5g00571 1008 Gene3D Transferase(Phosphotransferase) domain 1 803 1005 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00571 Pumo-Chr5 11435980 11439506 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g00571 20 1005 Receptor kinase-like Gene Family AT3G28040 64.558 0.0 1254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-1 Pumo5g00571 Pkinase 2.6e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g00571 - - gmx:100813764 1864.35