Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00569 ATGGATTATTCTTCTTCCATTTCTCACTTCCGAGCCTCCGCGAATTCGATCCTCTCCCAATACGAACCTCTCGCTCTGCTTCTCGCTCCAATCCTCTCTCTCCTCCTCGCCCACGCTCTCCTCTCCTTCTTCCACCTCCTCTCCGAGAAAGGACTCAAAGCCACGCTCCTAGGGTTTCTCATGAACTCTGTCAAATTGCTCCCCGGTGTGAAGGGATACATAGATGCCGAAAAACAAAAGGTTGTGGATAAGTTGCAATCTGATAGTAAATCTAAAAGAGAAGGTTGGAAAACTGAGTTGCCAAGCACAGGATTAGGGACATCTGTCCTTGAGAAAATGAGAGAGGAGAAAATAAATGATGCAGCTTGGCAAGGCAAATGCTCTGGTACAGTCTACATTGGAGGAAGTGAATCTGATGGACATTTTTCTCTGATAAATGAGGCATGTTCAATGTTTGCACATACCAACCCCCTGCATTTGGATGTATTCAAGAGTGTTGCACGCTTTGAGGCAGAAGTGGTTGCAATGACAGCAGCACTTCTTGGAAGTAAGGAAAAGAGTTCTGGAGGACAAATATGTGGCAACATGACATCAGGCGGGACTGAAAGTATATTATTAGCTGTCAAATCATCTCGTGACTATATGAAATCTAAGAAAGGAATTACAAGACCTGAAATGATTATTCCCGAGTCTGGACACTCAGCATATGACAAGGCTGCACAGTATTTTAATATCAAACTATGGCGTGTACCAGTTAACAAGAATTTTCAAGCTGATGTGAAAGCGATTCGACGTCATATTAACAAAAATACCATCTTGATTGTTGGATCTGCTCCTGGGTTTCCTCATGGAGTAATTGACCCCATCGAAGAACTTGGTCATCTGGCATCAAGCTTTGGTATTTGTTTCCATGTGGACCTTTGCCTTGGTGGCTTTGTATTACCATTTGCTCGTGAGCTTGGGTACCACATTCCACCTTTTGATTTTTCTGTTAAAGGGGTTTCTTCAATATCAGTGGATGTACATAAATACGGTTTAGCTCCCAAAGGAACAAGTGTAGTTCTTTATAGAAACCATGAAATCAGAAAGCTATTTGCCCATGGGGGTTTTGCTCATGGAGTTGCTATTCTAATAAGTGAAGAGACTAGCATAGAAGACATTGCTGAGTTGTTTATTGTTGGAAAACCCGACATGACGATAGTGGCTTTTGGATCTGATGTTCTGGATATATTCGAAGTCAATGATGTTATGTCATCCAAAGGGTGGCATTTGAATGCATTACAGAGACCCAACAGCATCCATATCTGTGTGACACTGCAACATGTGCCAATTGTTGAAGACTTTCTCAAGGATTTGAAGGAATCTGTGGAAACTGTGAAAGCAAATCCAGGTCCAATAAGTGGAGGCCTAGCACCTATATATGGTGCCGCAGGGAAGATGCCAGATAGAGGCATGGTCCAGGAATTGCTGGTAGATTATATGGACGGTACCTGCTAA 1497 0.4282 MDYSSSISHFRASANSILSQYEPLALLLAPILSLLLAHALLSFFHLLSEKGLKATLLGFLMNSVKLLPGVKGYIDAEKQKVVDKLQSDSKSKREGWKTELPSTGLGTSVLEKMREEKINDAAWQGKCSGTVYIGGSESDGHFSLINEACSMFAHTNPLHLDVFKSVARFEAEVVAMTAALLGSKEKSSGGQICGNMTSGGTESILLAVKSSRDYMKSKKGITRPEMIIPESGHSAYDKAAQYFNIKLWRVPVNKNFQADVKAIRRHINKNTILIVGSAPGFPHGVIDPIEELGHLASSFGICFHVDLCLGGFVLPFARELGYHIPPFDFSVKGVSSISVDVHKYGLAPKGTSVVLYRNHEIRKLFAHGGFAHGVAILISEETSIEDIAELFIVGKPDMTIVAFGSDVLDIFEVNDVMSSKGWHLNALQRPNSIHICVTLQHVPIVEDFLKDLKESVETVKANPGPISGGLAPIYGAAGKMPDRGMVQELLVDYMDGTC 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00569 498 SUPERFAMILY PLP-dependent transferases 74 462 IPR015424 -
Pumo5g00569 498 Gene3D - 138 374 IPR015421 GO:0003824
Pumo5g00569 498 FunFam Sphingosine-1-phosphate lyase 1 459 497 - -
Pumo5g00569 498 Pfam Pyridoxal-dependent decarboxylase conserved domain 154 360 IPR002129 GO:0016830|GO:0019752|GO:0030170
Pumo5g00569 498 Gene3D Aspartate Aminotransferase, domain 1 375 453 IPR015422 GO:0003824
Pumo5g00569 498 Gene3D - 454 497 - -
Pumo5g00569 498 PANTHER - 39 364 - -
Pumo5g00569 498 FunFam sphingosine-1-phosphate lyase 1 138 374 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g00569 154 456 Calmodulin-binding Proteins AT5G17330 23.889 6.31e-14 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g00569 K01634 - gmx:100794395 871.307
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g00569 5 11418979 11425224 Pumo5g00569 5 11418979 11425224 ECH