Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00548 ATGGCTTCTTCACTGGGTCGAAGAAGAACCCACGCTCCCAAATTAAACGACGGCGTCTCCTGCGAGGAATGCGGAAAGGACCACTCCCCTGCCAAGTTGCTTCTGTGCGACAAATGCGACCGAGGCTACCACCTCTTCTGCCTCCGCCCCATTCTTCCTTCTGTCCCCAAAGGCTCTTGGTTCTGCCCCTCTTGTTCCAACCACAAACCCAAGTCTTTCCCCCTTGTCCAGACCAAAATCATTGACTTCTTTCGAATCCAACGCTCCCCCGAGGCATTGTCGAATCAAGACACGCGGAGGAAGCGAAAGAGGGGTGGGAGCTTGGTGGTGTCGAAGAAGAAGAGGAAGCTGTTGGCGTTCGTGCCGAGTGAGGATCCGAAGAGGAGATTGGAGCAGATGGCGTCGCTGGCGACGGCGTTGACTGCAACGAAAACGGAGTTCAGCAATGAGCTTACTTACATGCCTGGAATGGCCCCAAGCTCCGCTAATCGCCCTGCTCTCGAGCGCGGCGGAATGCAGGTCTTGTCAAAAGAAGACACCGAGACCTTAAACCTGTGCAGAAGTATGATGGAAAGAGGAGAATGGCCACCTCTCATGGTTGTGTTTGATCCTCTAGAAGGCTTCACTGTAGAAGCAGATAGACCCATCAAAGATTTAACCATAATAACAGAATATGTTGGAGATGTAGACTTTTTAAAGAACAGGGAAAATGACGATGGAGATAGCATAATGACACTTCTCTCAGCTTCTAATCCTTCACAGACTCTTGTCATCTGTCCAGACAAACGTAGCAACATAGCACGTTTCATTAACGGCATCAATAATCACACACCGGAAGGGAAAAAGAAGCAGAACTTAAAATGCGTGAGGTTTGATGTTGGAGGTGAATGTCGGGTTCTTTTAATCGCCAACAGAGATATTACAAAGGGGGAAAGGTTGTACTACGACTACAACGGAGATGAACATGAATATCCAACTGAACATTTTGTCTGA 993 0.4874 MASSLGRRRTHAPKLNDGVSCEECGKDHSPAKLLLCDKCDRGYHLFCLRPILPSVPKGSWFCPSCSNHKPKSFPLVQTKIIDFFRIQRSPEALSNQDTRRKRKRGGSLVVSKKKRKLLAFVPSEDPKRRLEQMASLATALTATKTEFSNELTYMPGMAPSSANRPALERGGMQVLSKEDTETLNLCRSMMERGEWPPLMVVFDPLEGFTVEADRPIKDLTIITEYVGDVDFLKNRENDDGDSIMTLLSASNPSQTLVICPDKRSNIARFINGINNHTPEGKKKQNLKCVRFDVGGECRVLLIANRDITKGERLYYDYNGDEHEYPTEHFV 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00548 330 CDD PHD_RSF1 21 65 - -
Pumo5g00548 330 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 15 71 IPR013083 -
Pumo5g00548 330 SUPERFAMILY FYVE/PHD zinc finger 13 72 IPR011011 -
Pumo5g00548 330 PANTHER N-LYSINE METHYLTRANSFERASE KMT5A 94 328 - -
Pumo5g00548 330 Pfam PHD-finger 21 67 IPR019787 -
Pumo5g00548 330 CDD SET_ATXR5_6-like 193 330 - -
Pumo5g00548 330 ProSitePatterns Zinc finger PHD-type signature. 21 65 IPR019786 -
Pumo5g00548 330 FunFam Histone-lysine N-methyltransferase ATXR5 101 330 - -
Pumo5g00548 330 SUPERFAMILY SET domain 188 321 IPR046341 -
Pumo5g00548 330 SMART PHD_3 20 66 IPR001965 -
Pumo5g00548 330 ProSiteProfiles Zinc finger PHD-type profile. 18 68 IPR019787 -
Pumo5g00548 330 Gene3D SET domain 102 330 IPR046341 -
Pumo5g00548 330 ProSiteProfiles SET domain profile. 196 318 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00548 Pumo-Chr5 11193202 11196027 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g00548 10 81 C2H2 Transcription Factor Family AT3G01460 30.667 6.61e-08 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pumo5g00548 PHD 3.4e-11 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g00548 K24406 - gmx:100775247 625.165