Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00543 ATGGTGGGGAACGACGACGCGGGGCACCTCTCCGCCTCCCGGAAAATGTTCTGGCGGTCGGCGTCGTGGTCCTCCTCGCGCACCGCCGCCGGAAACGCCTCTTCCGGCGAGGCGGAGAAGGGTTTCGCCGATTCCGGCGGCGCCGACGGTCCCCACGGCCAGAACCGGCGGTTCCCTCCGCCGCCGCTGACACCTCGGTCGCAGCAGAATTGCAAGGCGCGGTCGTGCCTGCCGCCGCTGCAGCCGCTCTCCATCGCCCGCCGGAGCCTCGACGAGTGGCCGAAGGCGGGCTCCGACGACATCGGCGAGTGGCCGCAGCCGCCCACCACCCCCAGCGGGAGAGGTAATGGTAGCAATGGTGAAAGGTTGAAACTCGATTTGTCTTCCATTCAGCATAACAACCCTGATCATAGTAGGAGTAACAATGGAAATGGGCTTGTCAAGAGGGATAAGTTTGCATTTTTTGATAAGGAATGTTCAAAAGTTGCTGATCATGTGTACCTTGGTGGTGATGCTGTTGCTAGGGATAGGGACATTTTGAAGCATAATGGGATCACTCATGTGTTGAATTGTGTGGGGTTTGTGTGTCCTGAGTACTTTAAGGCTGATTTTGTGTATAGGACTTTGTGGCTGCAGGATAGTCCCTCTGAGGACATTACTAGCATCTTGTATGATGTGTTTGACTACTTTGAGGATGTTAGGGAGCAAGGTGGGAGGGTGTTTGTGCACTGTTGTCAAGGGGTGTCTAGGTCTACCTCTTTGGTCATTGCTTACCTTATGTGGAGGGAAGGGCAGAGTTTTGATGATGCTTTTCAGTTTGTGAAGGCGGCCAGAGGGATCGCTGATCCGAATATGGGATTTGCTTGCCAGCTGTTGCAGTGCCAGAAGAGGGTCCATGCTGTCCCTCTCAGCCCTAGCTCTTTGCTGAGGATGTATAGAATTGCTCCACACTCGCCGTATGATCCTTTGCATCTTGTTCCCAAAATGTTGACAGATCCTTCGGCGGCTGCGTTGGACTCCAGAGGTGCGTTTATTGTGCATGTTCCTTCGGCGATATATGTTTGGATTGGTAAGAATTGTGAGGCCATCATGGAGAGGGATGCCAGAGGGGCTGTTGGCCAGATTGTCCGGTATGAGAAGGTGCAAGGACCTATTGTGATGATTAAGGAAGGTGAGGAACCAGCTTACTTTTGGGATGCTTTTTCAAATTTTCTGCCCTTGATGGACAAATCTGGCAATAGAGCAGAAGATGCCAAATTAACTAGTAAAGTTTTGCCTGGTGAGAGGAGAGTGGAAGCATACAATGTTGATTATGAAGTTTTCAAAAAAGCAATCACTGGAGGCTTTGTGCCTCCATTTGCTTCATCGGATGAACATGAAACCCATCTGCCTGCAAGAGAGAGTAGTTGGAGTGTTTTAAGGCGTAAAGTTTCCTCTGCCAATATGAAGGAGTTTGTTTCGGCCCCTAGGTTATCCTTTCCAAGGGTTTATTCAGATTCCATGTTGTGTATTCATACATCAGCAAATTTGTCTCCGTCCGCATCCCTGTCGTCATCTTCATCATCTATATCATCATCCTCTTCACCATCTTATGTTTCTCCAGATTCCATTTCTTCTGATTCTAGCACTCATTCAAAGTTTTTGTCAGAAGTGTCCCCAGATTCTTACTCCGTGGTTTTGACTCCTATTCCTGTATCTTCATCTTTGTCTAATTTTTCTAATTTGTCAATCTCATCAAATTCTACTTCTCAAACAGTGTCTAACAGTACAGATATCCTTGGTGTCAAGTTATCACATCCCTGGTCTCAGTCAGCCTCTTTACCATTGAAAAAACCATCAACTTCCCTTGCTGAACGCAGAGGTAGTTTGTCAAAATCTTTGAAGTTGCCAGCTGATGAATGA 1902 0.4874 MVGNDDAGHLSASRKMFWRSASWSSSRTAAGNASSGEAEKGFADSGGADGPHGQNRRFPPPPLTPRSQQNCKARSCLPPLQPLSIARRSLDEWPKAGSDDIGEWPQPPTTPSGRGNGSNGERLKLDLSSIQHNNPDHSRSNNGNGLVKRDKFAFFDKECSKVADHVYLGGDAVARDRDILKHNGITHVLNCVGFVCPEYFKADFVYRTLWLQDSPSEDITSILYDVFDYFEDVREQGGRVFVHCCQGVSRSTSLVIAYLMWREGQSFDDAFQFVKAARGIADPNMGFACQLLQCQKRVHAVPLSPSSLLRMYRIAPHSPYDPLHLVPKMLTDPSAAALDSRGAFIVHVPSAIYVWIGKNCEAIMERDARGAVGQIVRYEKVQGPIVMIKEGEEPAYFWDAFSNFLPLMDKSGNRAEDAKLTSKVLPGERRVEAYNVDYEVFKKAITGGFVPPFASSDEHETHLPARESSWSVLRRKVSSANMKEFVSAPRLSFPRVYSDSMLCIHTSANLSPSASLSSSSSSISSSSSPSYVSPDSISSDSSTHSKFLSEVSPDSYSVVLTPIPVSSSLSNFSNLSISSNSTSQTVSNSTDILGVKLSHPWSQSASLPLKKPSTSLAERRGSLSKSLKLPADE 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00543 633 CDD DSP 159 293 - -
Pumo5g00543 633 Gene3D Severin 309 405 IPR029006 -
Pumo5g00543 633 MobiDBLite consensus disorder prediction 601 633 - -
Pumo5g00543 633 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 217 278 IPR000387 GO:0016311|GO:0016791
Pumo5g00543 633 MobiDBLite consensus disorder prediction 19 78 - -
Pumo5g00543 633 MobiDBLite consensus disorder prediction 601 621 - -
Pumo5g00543 633 SUPERFAMILY Actin depolymerizing proteins 305 409 - -
Pumo5g00543 633 MobiDBLite consensus disorder prediction 19 33 - -
Pumo5g00543 633 MobiDBLite consensus disorder prediction 94 122 - -
Pumo5g00543 633 Gene3D Protein tyrosine phosphatase superfamily 131 300 IPR029021 -
Pumo5g00543 633 ProSitePatterns Tyrosine specific protein phosphatases active site. 242 252 IPR016130 GO:0016311|GO:0016791
Pumo5g00543 633 SMART dsp_5 158 297 IPR020422 GO:0006470|GO:0008138
Pumo5g00543 633 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 150 299 IPR029021 -
Pumo5g00543 633 PANTHER MKPA PROTEIN 12 631 - -
Pumo5g00543 633 ProSiteProfiles Dual specificity protein phosphatase domain profile. 158 300 IPR020422 GO:0006470|GO:0008138
Pumo5g00543 633 Pfam Dual specificity phosphatase, catalytic domain 166 296 IPR000340 GO:0008138|GO:0016311
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00543 Pumo-Chr5 11130364 11132265 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g00543 2 194 Protein tyrosine phosphatase (PTP) family AT3G55270 62.176 2.25e-67 233
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g00543 - - vum:124838930 1118.99